View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_22 (Length: 566)
Name: NF8981_high_22
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 8457314 - 8456788
Alignment:
| Q |
19 |
cccacggtaatggaattccatcaaaacgattatacatccctccatgtccttgggtggtaccaacacgatgattgataactatatcagccattgctctgac |
118 |
Q |
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| T |
8457314 |
cccacggtaatggaattccatcaaaacgattatacatccctccatgtccttgggtggtaccaacacgatgattgataactatatcagccattgctctgac |
8457215 |
T |
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| Q |
119 |
tttctgttgcttcaacttttgaagtaaagcttttaattgatgctcagaaccatatttactattaagagagtaaaggttctgaggagtgtaacctgcaaaa |
218 |
Q |
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| T |
8457214 |
tttctgttgcttcaacttttgaagtaaagcttttaattgatgctcagaaccatatttactattaagagagtaaaggttctgaggagtgtaacctgcaaaa |
8457115 |
T |
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| Q |
219 |
cagaggaaagacaataaattattgcactttaagaccctagaatcgtatgcctaatacttcaaaggcagttgattttaccttcaggcgagaaggaatgagt |
318 |
Q |
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| T |
8457114 |
cagaggaaagacaataaattattgcacttcaagaccctagaatcgtatgcctaatacttcaaaggcagttgatttaaccttcaggcgagaaggaatgagt |
8457015 |
T |
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| Q |
319 |
tggcggtggcaaccatgctgaagtgattccagctttagctatgtcc-gaactttgctttctaaatttgcccaccaatcgtatttgtgagactcccagtta |
417 |
Q |
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| T |
8457014 |
tggcggtggcaaccatgctgaagtgattccagctttagctatgtccggaactttgctttctaaatttgcccaccaatcgtatttgtgagactcccagtta |
8456915 |
T |
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| Q |
418 |
aatgcctacaaagcaattttcttcaattgtgagatgtattgtatgcgaagttcacgtcagacttagattaaaagacaaaatatgtgatatgataagcatg |
517 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8456914 |
aatgcctacaaagcaattttcttcaattgtgagatttattgtatgcgaagttcacgtcagacttagattaaaagacaaaatatgtgacatgataagcatg |
8456815 |
T |
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| Q |
518 |
taaacaagtaatccatcctattagttt |
544 |
Q |
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| T |
8456814 |
taaacaagtaatccatcctattagttt |
8456788 |
T |
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