View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_43 (Length: 454)
Name: NF8981_high_43
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 29948133 - 29947684
Alignment:
| Q |
1 |
ttttccgtggaatcaattggcctttaatccgcaacatggtagtatccttgtgatttcctttaaatttagtgattagaaataatatcttcatcatagcaaa |
100 |
Q |
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| T |
29948133 |
ttttccgtggaatcaattggcctttaatccgcaacatggtagtatccttgtgatttcctttaaatttagtgattagaaataatatcttcatcatagcaaa |
29948034 |
T |
|
| Q |
101 |
tggtttaggtctggttcaactggtgtttaaaagtaattttatcatttagaaaagttagaagcgatattattgcaataaccacc------tgtaattatct |
194 |
Q |
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| T |
29948033 |
tggtttaggtctggttcaactggtgtttaaaagtaattttatcatttagaaaagttagaagcgatattattgcaataaccaccaccacctgtaattatct |
29947934 |
T |
|
| Q |
195 |
gtttcatgcagagtccacccccattagatgttcctcttcaattcataggaaaagatccaacggccaaggacaagaagtgggaagatgatggtgttctcaa |
294 |
Q |
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| T |
29947933 |
atttcatgcagagtccacccccattagatgttcctcttcaattcataggaaaagatccaacggccaaggacaagaagtgggaagatgatggtgttctcaa |
29947834 |
T |
|
| Q |
295 |
tacctccattgatatggatattttttgaagttcaacagaagattcgtcagtatgggatgttttgttatagtgattcatgtttcaaaacaatcactataac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29947833 |
tacctccattgatatggatattttttgaagttcaacagaagattcgtcagtatgggatgttttgttatagtgattcatgtttcaaaacaatcactataac |
29947734 |
T |
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| Q |
395 |
tgagatattcaagtgcaagaacttcgtctatcgatctggttgatgtccat |
444 |
Q |
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| T |
29947733 |
tgagatattcaagtgcaagaacttcgtctatcgatctggttggtgtccat |
29947684 |
T |
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