View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_44 (Length: 453)
Name: NF8981_high_44
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 12684458 - 12684904
Alignment:
| Q |
19 |
ataatcacaacatgaacatagaatcaaaaacttccaagatatgtaagctgtgaaaacaaattctcaaaaagaaaaactcacatatgcttagttggtccaa |
118 |
Q |
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| T |
12684458 |
ataatcacaacatgaacatagaatcaaaaacttccaagatatgtaagctgtgaaaacaaattctcaaaaagaaaaactcacatatgcttagttggtccaa |
12684557 |
T |
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| Q |
119 |
gggggctgccactaatgcaagaactttatgcccccaaattttagaggtctcatgttagaccctcaaatattttttgctttaaatatattttagaaagtca |
218 |
Q |
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| T |
12684558 |
gggggctgcccctaaagcaagaactttatgcccccaaattttagaggtctcatgttagaccctcaaatattttttgctttaaatatattttagaaagtca |
12684657 |
T |
|
| Q |
219 |
gagtttggac-----------atgattttgtggcgtatttcttactcctatactgtgttggaggagttatatggacatggttttctactgatgattagcc |
307 |
Q |
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| T |
12684658 |
gagtttggacattgtttgaatatgattttgtggcgtatttcttactcctatactgtgttggaggagttatatggacatggttttctactgatgattagcc |
12684757 |
T |
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| Q |
308 |
tttgtagtttgtgatggaccattcttaccttcctgttatggaatgg-----------------ctggaagttcctttttaaagttttattactggaagtt |
390 |
Q |
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| T |
12684758 |
tttgtagtttgtgatggaccattcttaccttcctgttatggaatggctggttgttcatactttctggaagttcctttttgaagttttattactggaagtt |
12684857 |
T |
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| Q |
391 |
ttctactgatgtcatacttgctggctgttcatacttggctggtgatg |
437 |
Q |
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| T |
12684858 |
ttctactgatgtcatacttgctggctgttcatacttggctggtgatg |
12684904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 321
Target Start/End: Complemental strand, 3786382 - 3786283
Alignment:
| Q |
221 |
gtttggacatgattttgtggcgtatttcttactcctatactgtgttggaggagttatatggacatggttttctactgatgattagcctttgtagtttgtg |
320 |
Q |
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| T |
3786382 |
gtttggatatggttttgtggcacatttgatactcttatactgtgttggaggggttatatggacaaggttttctactgatg-ttagcctttatcgtttgtg |
3786284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 19473061 - 19472998
Alignment:
| Q |
233 |
ttttgtggcgtatttcttactcctatactgtgttggaggagttatatggacatggttttctact |
296 |
Q |
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| T |
19473061 |
ttttgtggtgcatttcttactcctatattgttttggaggagttatatggacaaggttttctact |
19472998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 19543986 - 19543923
Alignment:
| Q |
233 |
ttttgtggcgtatttcttactcctatactgtgttggaggagttatatggacatggttttctact |
296 |
Q |
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| T |
19543986 |
ttttgtggtgcatttcttactcctatattgttttggaggagttatatggacaaggttttctact |
19543923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 19588710 - 19588773
Alignment:
| Q |
233 |
ttttgtggcgtatttcttactcctatactgtgttggaggagttatatggacatggttttctact |
296 |
Q |
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| T |
19588710 |
ttttgtggtgcatttcttactcctatattgttttggaggagttatatggacaaggttttctact |
19588773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 34619109 - 34619068
Alignment:
| Q |
116 |
caagggggctgccactaatgcaagaactttatgcccccaaat |
157 |
Q |
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| T |
34619109 |
caagggggctgccactaaagcaagaactttaggcccccaaat |
34619068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 41397937 - 41397893
Alignment:
| Q |
116 |
caagggggctgccactaatgcaagaactttatgcccccaaatttt |
160 |
Q |
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| T |
41397937 |
caagggggctgccactaaagcaagagctataggcccccaaatttt |
41397893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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