View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_50 (Length: 436)
Name: NF8981_high_50
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 47159808 - 47160222
Alignment:
| Q |
10 |
atggacatcacctaggctcgtgtagttcaccaaacattgtatttatttttctgttttacagtggaaacaaaatatggacac--gagtgacaatctagaaa |
107 |
Q |
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| T |
47159808 |
atggacataacctaggctcgtgtagttcaccaaacattgtatttatttttctgttttacagtggaaacaaaatatcgacacaagagtgacaatctagaaa |
47159907 |
T |
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| Q |
108 |
ttttagcttatggggtccaggctatttatcataaatatttatgcaaaaacatacatgaatcattaatgataaaacgacgacactgtcataattaagcaaa |
207 |
Q |
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| T |
47159908 |
ttttagcttatggggtccaggctatttatcataaatatttatgcaaaaacatacatgaatcattaatgataaaacgacgacattgtcataattaagcaaa |
47160007 |
T |
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| Q |
208 |
ataatttgaagaatataaatttattgaattgtttatcc--aaaaaaaaattgtagacaccttaacatctatgaaataccccttcnnnnnnnnnnnnnntc |
305 |
Q |
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| T |
47160008 |
ataatttgaagaatataaatttattgaattgtttatccaaaaaaaaaaattgtagacaccttaacatctatgaaataccccttcaaaaaaaaataaaatc |
47160107 |
T |
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| Q |
306 |
tatgaaatctaatttgattcttcatgtgtctttgtattgaagttgtaagatatatttatattgaacaccatcaagtatatcactttttatgtatgtgacg |
405 |
Q |
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| T |
47160108 |
tatgaactctaatttgattcttcatgtgtctttgtattgaagttgtaagatatatttatattgaacaccatcaagtatatcactttttatgtatgtgacg |
47160207 |
T |
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| Q |
406 |
agacaatcataatta |
420 |
Q |
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| T |
47160208 |
agacaatcataatta |
47160222 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 3806852 - 3806816
Alignment:
| Q |
131 |
atttatcataaatatttatgcaaaaacatacatgaat |
167 |
Q |
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| T |
3806852 |
atttatcataaatatttatgctaaaacatatatgaat |
3806816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 26956302 - 26956350
Alignment:
| Q |
369 |
aacaccatcaagtatatcactttttatgtatgtgacgagacaatcataa |
417 |
Q |
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| T |
26956302 |
aacactatcaagtatttcgctttctatgtatgtgatgagacaatcataa |
26956350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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