View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_high_54 (Length: 424)
Name: NF8981_high_54
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 21 - 407
Target Start/End: Original strand, 53556038 - 53556421
Alignment:
| Q |
21 |
ataagaatatgaacttaataattcgtacaatttagtcatgacggataagatgctagatttcattggtgtgtggtttcaaataagaatcagttggttatga |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53556038 |
ataagaatatgaacttaat--ttcgtacaatttagtcatgacggataagatggtagatttcattggtgtgtggtttcaaataagaatcagttggttatga |
53556135 |
T |
|
| Q |
121 |
ttttgtggagactgaaaacnnnnnnn--ggacagacacaatttcaaggccattgactctaagccagtttttctatctttcatcacctgctgatccttagt |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53556136 |
ttttgtggagactgaaaacaaaaaaaaaggacagacacaatttcaaggccattgactctaagccagtttttctatctttcatcacctgctgatccttagt |
53556235 |
T |
|
| Q |
219 |
caacacaaatccaannnnnnnnnnnngcagaagaagtttctaataatgttcattttaattccctgcttaattaatcttgttcagcttaatctttcccatc |
318 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53556236 |
caacacaaatccaaacacacacacacgcagaa---gtttctaataatgttcattttaattccctgcttaattaatcttgttcagcttaatctttcccatc |
53556332 |
T |
|
| Q |
319 |
gtatcatgtgaatcttccattattttctaggtaattatggagctctattttagagggtaagtttcaaatctctttgaacctttagacat |
407 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
53556333 |
gtatcatgtgaatcttctattattttctaggtaattatggagctctattttagagggtaaatttcaaatctcttcgaacctttagacat |
53556421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University