View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_55 (Length: 424)
Name: NF8981_high_55
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Complemental strand, 21416574 - 21416181
Alignment:
| Q |
14 |
cagagaaacagagcaagctgaagaggtagatagaagaaaactcacattgagctgaaccatatagttcattctaacattttcactttcatcacaaagctta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21416574 |
cagagaaacagagcaagctgaagaggtagatagaagaaaactcacattgagctgaaccatatagttcattctaacattttcactttcatcacaaagctta |
21416475 |
T |
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| Q |
114 |
tccaaaaacaaaaacctccttaacccatacttcttcacaaacgtggacaaacacaaaaacgacaacaccgcaacagaactcaacgaaatctgaacaacag |
213 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21416474 |
tccaaaaacaaaaaccttctcaacccatacttcttcacaaacgtcgacaaacacaaaaacgacaacaccgcaacagaactcaacgaaatctgaacaacag |
21416375 |
T |
|
| Q |
214 |
aatcatacggtctcgaatgtctcgcatcacaatcttcacatgctagaaaaaagtgcgacaaagcaggaacagccaaggcgaagacgaagaaaacgaacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21416374 |
aatcatacggtctcgaatgtctcgcatcacaatcctcacatgctagaaaaaagtgcgacaaagcaggaacagccaatgcgaagacgaagaaaacgaacca |
21416275 |
T |
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| Q |
314 |
tgagagtgttgcgtggattgcgtttgattgatccacacacatccatcggagatatgatcggaaagtgtggagttcgtcgttaacgtgggagatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21416274 |
ggagagtgttgcgtggattgcgtttgattgatccacacacatccatcggagatatgatcggaaagtgtggagttcgtcgtttacgtgggagatg |
21416181 |
T |
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