View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_56 (Length: 424)
Name: NF8981_high_56
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 23510085 - 23510491
Alignment:
| Q |
1 |
tagagaggtttagttgctcgtgatgtctaaacacatattaaactatatgaatnnnnnnncacattagagaataatcaccgatgatgattcctcgctccag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
23510085 |
tagagaggtttagttactcgtgatgtctaaacacatattaaactatatgaataaaaaaacacattagagaataatcaccgatgatgattcctcgcttcaa |
23510184 |
T |
|
| Q |
101 |
aagtactccatatcgctctgaaacgccctagatcacacttttgctattttttgctcgtcaaaaggtgatttctcactaacctaagggtcacgtatatata |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23510185 |
aagtactccatatcgctctgaaacatcctagatcacacttttgctattttttgctcgtcaaaaggtgatttctcactaacctaagggtcacgtatatata |
23510284 |
T |
|
| Q |
201 |
ggcgcctgtttcctagaattttagggaaagtcaacccgtgacacaagaaattatctcttgagtcgaaccttgacaaagctaannnnnnngtttcaccaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23510285 |
ggcgcctgtttcctagaattttagggaaagtcaacccgtgacgcaagaaattatctcttgagtcgaaccttgacaaagctaatttttttgtttcaccaac |
23510384 |
T |
|
| Q |
301 |
aatttcttgcgccgtggggttgatagactgagacgtgatcttggcagaagctgaacttgacgatttctattgtgttttgtgactagaaatcctatataat |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23510385 |
aatttcttgcgacgtggggttgatagactgagacgtgatcttggcagaagctgaacttgacgatttctattgtgttttgtgactagaaatcctatataat |
23510484 |
T |
|
| Q |
401 |
ttcttat |
407 |
Q |
| |
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||||||| |
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| T |
23510485 |
ttcttat |
23510491 |
T |
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