View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_6 (Length: 866)

Name: NF8981_high_6
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_6
NF8981_high_6
[»] chr2 (19 HSPs)
chr2 (12-849)||(37091422-37092259)
chr2 (766-829)||(17981594-17981657)
chr2 (756-837)||(5394485-5394566)
chr2 (756-837)||(37179972-37180053)
chr2 (773-837)||(25423833-25423897)
chr2 (764-837)||(31579208-31579281)
chr2 (764-829)||(42745095-42745160)
chr2 (756-829)||(14551571-14551644)
chr2 (777-839)||(7020352-7020414)
chr2 (775-837)||(9438126-9438188)
chr2 (756-831)||(17655756-17655833)
chr2 (766-837)||(18105344-18105414)
chr2 (773-839)||(13835445-13835511)
chr2 (797-839)||(14121894-14121936)
chr2 (773-828)||(1682120-1682175)
chr2 (776-838)||(3562181-3562243)
chr2 (773-823)||(14412824-14412874)
chr2 (788-834)||(39401072-39401118)
chr2 (773-826)||(38372982-38373035)
[»] chr4 (22 HSPs)
chr4 (451-724)||(17346262-17346535)
chr4 (451-724)||(17137259-17137529)
chr4 (756-837)||(31307037-31307118)
chr4 (756-839)||(9012357-9012440)
chr4 (756-838)||(35972431-35972513)
chr4 (764-837)||(51626285-51626358)
chr4 (773-837)||(38766178-38766242)
chr4 (756-837)||(46016238-46016319)
chr4 (86-158)||(17137070-17137142)
chr4 (756-839)||(33529344-33529427)
chr4 (773-839)||(14854692-14854758)
chr4 (86-167)||(17346642-17346723)
chr4 (756-837)||(46250526-46250607)
chr4 (773-839)||(15133462-15133528)
chr4 (766-836)||(35334079-35334149)
chr4 (756-831)||(45994617-45994692)
chr4 (780-835)||(13948587-13948642)
chr4 (788-838)||(13686690-13686740)
chr4 (766-816)||(32005127-32005177)
chr4 (763-838)||(18841573-18841649)
chr4 (756-837)||(31308386-31308467)
chr4 (789-838)||(36990098-36990147)
[»] chr8 (15 HSPs)
chr8 (756-834)||(2744025-2744103)
chr8 (756-837)||(4124995-4125076)
chr8 (756-837)||(7839224-7839305)
chr8 (756-839)||(19715696-19715780)
chr8 (756-837)||(13468716-13468797)
chr8 (756-837)||(30936093-30936174)
chr8 (762-823)||(39086855-39086916)
chr8 (777-831)||(12958077-12958131)
chr8 (756-831)||(8521793-8521867)
chr8 (796-837)||(30056012-30056053)
chr8 (773-838)||(40320184-40320249)
chr8 (764-835)||(13005657-13005728)
chr8 (788-831)||(36994503-36994546)
chr8 (792-839)||(24988586-24988633)
chr8 (796-837)||(15683018-15683059)
[»] chr7 (24 HSPs)
chr7 (756-837)||(29059894-29059975)
chr7 (756-837)||(31492192-31492273)
chr7 (766-831)||(21747021-21747086)
chr7 (749-829)||(37339697-37339777)
chr7 (756-829)||(28665187-28665260)
chr7 (756-839)||(19477223-19477303)
chr7 (756-839)||(11486715-11486798)
chr7 (757-831)||(31776513-31776587)
chr7 (757-834)||(45778956-45779033)
chr7 (763-839)||(20207584-20207660)
chr7 (756-839)||(33299166-33299249)
chr7 (766-831)||(35707941-35708006)
chr7 (756-837)||(28537479-28537556)
chr7 (799-837)||(14545032-14545070)
chr7 (773-839)||(24172296-24172362)
chr7 (788-838)||(29428795-29428845)
chr7 (756-839)||(32470003-32470088)
chr7 (754-831)||(25421210-25421286)
chr7 (765-818)||(36821060-36821113)
chr7 (764-832)||(3231313-3231381)
chr7 (776-834)||(28828756-28828814)
chr7 (773-831)||(42741797-42741854)
chr7 (756-830)||(1424669-1424745)
chr7 (756-813)||(49118220-49118277)
[»] chr5 (10 HSPs)
chr5 (756-837)||(5123469-5123550)
chr5 (756-837)||(10592016-10592097)
chr5 (756-829)||(22187969-22188042)
chr5 (756-831)||(31113429-31113504)
chr5 (756-839)||(25983752-25983835)
chr5 (766-837)||(30784967-30785038)
chr5 (756-834)||(29553631-29553709)
chr5 (789-838)||(36212984-36213033)
chr5 (760-838)||(373739-373817)
chr5 (651-698)||(6796801-6796848)
[»] chr3 (21 HSPs)
chr3 (756-829)||(8757441-8757514)
chr3 (756-837)||(20861337-20861418)
chr3 (756-837)||(27763810-27763891)
chr3 (756-837)||(30995936-30996017)
chr3 (756-839)||(25224786-25224869)
chr3 (756-835)||(1642697-1642776)
chr3 (756-839)||(48204282-48204365)
chr3 (756-831)||(55123192-55123267)
chr3 (756-839)||(38331215-38331299)
chr3 (757-839)||(22288322-22288404)
chr3 (762-818)||(40318426-40318482)
chr3 (756-838)||(44941236-44941317)
chr3 (795-838)||(15446084-15446127)
chr3 (757-804)||(22288643-22288690)
chr3 (756-839)||(40294699-40294782)
chr3 (756-838)||(46725513-46725594)
chr3 (797-838)||(15283159-15283200)
chr3 (773-830)||(39950308-39950365)
chr3 (756-831)||(25739182-25739258)
chr3 (333-376)||(54634144-54634187)
chr3 (773-839)||(48210948-48211014)
[»] scaffold0182 (1 HSPs)
scaffold0182 (755-837)||(26420-26502)
[»] chr1 (20 HSPs)
chr1 (756-830)||(16756178-16756252)
chr1 (764-837)||(42297421-42297494)
chr1 (754-838)||(15642543-15642628)
chr1 (756-837)||(36806700-36806781)
chr1 (756-837)||(49071666-49071747)
chr1 (768-837)||(28724761-28724830)
chr1 (773-836)||(9780977-9781040)
chr1 (763-821)||(18428120-18428178)
chr1 (557-722)||(8571806-8571971)
chr1 (762-839)||(46864178-46864255)
chr1 (756-831)||(22022215-22022290)
chr1 (756-839)||(44913196-44913279)
chr1 (796-837)||(12035639-12035680)
chr1 (772-812)||(7242794-7242834)
chr1 (764-824)||(32534184-32534244)
chr1 (791-830)||(6607700-6607739)
chr1 (788-831)||(10367599-10367642)
chr1 (784-815)||(21774671-21774702)
chr1 (773-839)||(10750684-10750750)
chr1 (756-829)||(39547335-39547408)
[»] chr6 (12 HSPs)
chr6 (756-836)||(12836868-12836948)
chr6 (759-837)||(12411237-12411315)
chr6 (756-830)||(21910301-21910374)
chr6 (773-834)||(28099335-28099396)
chr6 (775-835)||(9536858-9536918)
chr6 (786-838)||(21028843-21028895)
chr6 (786-838)||(21028980-21029032)
chr6 (799-837)||(423744-423782)
chr6 (775-837)||(31412211-31412273)
chr6 (774-829)||(17177235-17177290)
chr6 (756-838)||(278479-278561)
chr6 (788-838)||(28933226-28933276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (756-830)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (773-839)||(27213-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (795-838)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 773; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 12 - 849
Target Start/End: Original strand, 37091422 - 37092259
Alignment:
Q  12 tttggtgttctaacaaatatccatatcatagaatcaatctagnnnnnnntaaaatgcttgaagttgtttaaatgtaccttgatcaactgtgaatgtgtaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37091422 tttggtgttctaacaaatatccatatcatagaatcaatctagaaaaaaataaaatgcttgaagttgtttaaatgtaccttgatcaaccgtgaatgtgtaa 37091521  T
Q  112 gcattagaaccgcgaccattgatgataagcccgtctggtaaaggaaggtcacttccattgtctagaatggccttcaaattctgaaagaagaaatacataa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37091522 gcattagaaccgcgaccattgatgataagcccgtctggtaaaggaaggtcacttccattgtctagaatggccttcaaatcctgaaagaagaaatacataa 37091621  T
Q  212 atataaatatacttatagtttatgtgagatttctcaaatattgaacactacttctcaaatggcacaaaatgatagcagaagtcattgaattgagatcaga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37091622 atataaatatacttatagtttatgtgagatttctcaaatattgaacactacttctcaaatggcacaaaatgatagcagaagacattgaattgagatcaga 37091721  T
Q  312 cgacttagctcacacattaaataaattaattttaaacgatcttaactattgatttaaataagacggtcgagatcattaactgcgtgacacatttactacg 411  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||     
T  37091722 cgacttagctcacacattcaataaattaattttaaacgatcttaactaaagatttaaataagacggtcgagatcattaactgcgtgacacatttactaca 37091821  T
Q  412 cgaaatatgtctacttctagaagagtaaagctacttacagtgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37091822 cgaaatatgtctacttctagaagagtaaagctacttacagtgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaa 37091921  T
Q  512 acggtacaggaatcatagggcggctgttaattttgatgccaccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaat 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37091922 acggtacaggaatcatagggcggctgttaattttgatgccaccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaat 37092021  T
Q  612 ctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgc 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092022 ctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgc 37092121  T
Q  712 actccattcctattaagaatcatcacatactgttaacattagtcttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcga 811  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  37092122 actccattcctattaagaatcatcacatactcttaacattagtcttttttggtgtaaaccgggtatcctccgtgcacaactgcggagactaatccctcga 37092221  T
Q  812 gcattgtgggacccaaatggacggcaagatgatacttt 849  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  37092222 gcactgtgggacccaaatggacggcaagatgatacttt 37092259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 766 - 829
Target Start/End: Complemental strand, 17981657 - 17981594
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  17981657 taaaccgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat 17981594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 5394566 - 5394485
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||| |||||||| |  ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5394566 tttttgggtgtaaatcgagtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggca 5394485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 37179972 - 37180053
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||| | |||||||||||||| ||| |||| |||||||||||||||| |||||||||| ||||||| |||||    
T  37179972 ttttttggtgtaaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggca 37180053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 773 - 837
Target Start/End: Complemental strand, 25423897 - 25423833
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25423897 ggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggca 25423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 764 - 837
Target Start/End: Original strand, 31579208 - 31579281
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||  |||||| |||||    
T  31579208 tgtaaaccgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggca 31579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 764 - 829
Target Start/End: Original strand, 42745095 - 42745160
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||    
T  42745095 tgtaaaccgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaat 42745160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 756 - 829
Target Start/End: Complemental strand, 14551644 - 14551571
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    ||||||||| |||| |  |||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||    
T  14551644 ttttttggtataaatcgagtatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaat 14551571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 777 - 839
Target Start/End: Original strand, 7020352 - 7020414
Alignment:
Q  777 tcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||| ||||||  |||||||||| |||||||||||| |||||||||||| |||||||    
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaag 7020414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 775 - 837
Target Start/End: Original strand, 9438126 - 9438188
Alignment:
Q  775 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||| |||||| ||| ||||||||||| ||||||||||||| ||||||| |||||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggca 9438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 17655833 - 17655756
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcac--aactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||| ||||| | |||||||||| |||||  ||||||||||||||||||||||||| |||||| | ||||||||    
T  17655833 ttttttggcgtaaatcaggtatcctcctcgcacgcaactgcggagactaatccctcgagccttgtggaatccaaatgg 17655756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 766 - 837
Target Start/End: Original strand, 18105344 - 18105414
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||| | |||||||||||| |||||||| |||||||||||||||| |||||| ||| ||||||| |||||    
T  18105344 taaaccggatatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggca 18105414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 839
Target Start/End: Original strand, 13835445 - 13835511
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||| | ||||||||| || ||||||||||| | ||||||||||| |||||| ||||||||    
T  13835445 ggtatcctccacacacaactgcagaaactaatccctcaaacattgtgggactcaaatgaacggcaag 13835511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 797 - 839
Target Start/End: Original strand, 14121894 - 14121936
Alignment:
Q  797 agactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaag 14121936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 828
Target Start/End: Complemental strand, 1682175 - 1682120
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaa 828  Q
    ||||||||| | || ||||||||||||||||||||||||| ||| | |||||||||    
T  1682175 ggtatcctctgtgcgcaactgcggagactaatccctcgagtattataggacccaaa 1682120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 838
Target Start/End: Original strand, 3562181 - 3562243
Alignment:
Q  776 atcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||| |||||| |||||||| |||||| | |||| ||| ||||||||||||||||| ||||||    
T  3562181 atccgccgcgcgcaactgcgaagactagtacctcaagctttgtgggacccaaatgggcggcaa 3562243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 823
Target Start/End: Complemental strand, 14412874 - 14412824
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggac 823  Q
    |||||||| ||||||||||||| ||||||||| ||| ||||||| ||||||    
T  14412874 ggtatccttcgcgcacaactgcagagactaattccttgagcattatgggac 14412824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 834
Target Start/End: Original strand, 39401072 - 39401118
Alignment:
Q  788 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 834  Q
    ||||||||||| |||||| | |||||||||||||||| |||||||||    
T  39401072 caactgcggagtctaatctcacgagcattgtgggacctaaatggacg 39401118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 773 - 826
Target Start/End: Original strand, 38372982 - 38373035
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggaccca 826  Q
    |||||||||||||| ||||||   |||||||| ||| |||||||||||||||||    
T  38372982 ggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccca 38373035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 451 - 724
Target Start/End: Complemental strand, 17346535 - 17346262
Alignment:
Q  451 gtgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaattttgatgc 550  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||    |||||||||   || ||||| |||||||  | ||| ||    ||| |||  |    
T  17346535 gtgtgatttcttttgtaccaatctcctgccaatatggtgtaatctccggatggaggatcgaaaggtacgggaatcacggagcgactagcgattgtgaaac 17346436  T
Q  551 caccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccc 650  Q
    | |||||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||| ||    
T  17346435 cgccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttctgtcc 17346336  T
Q  651 tggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat 724  Q
    ||| |  |||||||| ||||| ||||| |||||||| |||||||| || ||||||||  |||||||||||||||    
T  17346335 tggagagattggacaatttgtaccatacactccatcctgccatgagtttctcctctgtagcactccattcctat 17346262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 451 - 724
Target Start/End: Original strand, 17137259 - 17137529
Alignment:
Q  451 gtgtgatttctgttgtaccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaattttgatgc 550  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    |||||||||  ||| |||||||||||||  | |||  |    ||| |||  |    
T  17137259 gtgtgatttcttttgtaccaatctcctgccagtatggtgaaatctccggatggaggatcaaaaggtacaggaatcacggagcgagtagcgattgtgaaac 17137358  T
Q  551 caccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccc 650  Q
    | |||||||| ||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||| ||||||   |||||  ||    
T  17137359 cgccataacctcctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagt---gttctttcc 17137455  T
Q  651 tggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat 724  Q
    ||| |  |||||||| ||||| ||||| ||||||||||||||||| || ||||||||| |||||||||||||||    
T  17137456 tggagagattggacaatttgtaccatacactccatcttgccatgagtttctcctctgcagcactccattcctat 17137529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 31307037 - 31307118
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31307037 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 31307118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 9012440 - 9012357
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| ||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9012440 tttttgggtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaag 9012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 756 - 838
Target Start/End: Complemental strand, 35972513 - 35972431
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||||||||||  |||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  35972513 ttttttggtgtaaactaggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaa 35972431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 764 - 837
Target Start/End: Original strand, 51626285 - 51626358
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||| | |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  51626285 tgtaaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggca 51626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 773 - 837
Target Start/End: Complemental strand, 38766242 - 38766178
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  38766242 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggca 38766178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 46016319 - 46016238
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||| | |||||||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||| |||||    
T  46016319 ttttttggtgtaaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggca 46016238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 17137070 - 17137142
Alignment:
Q  86 taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatgataagcccgtctggtaaaggaag 158  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || || || ||||||||    
T  17137070 taccttgatcaaccgtgaatgtgtaagcattagaaccgcgaccattgatgacaagtccatcagggaaaggaag 17137142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 33529427 - 33529344
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| |||||||| |  |||||||||| || |||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  33529427 tttttgggtgtaaatcaagtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaag 33529344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 773 - 839
Target Start/End: Complemental strand, 14854758 - 14854692
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| |||||||    
T  14854758 ggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaag 14854692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 17346723 - 17346642
Alignment:
Q  86 taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatgataagcccgtctggtaaaggaaggtcacttcc 167  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||| || || || |||||||| ||||||||    
T  17346723 taccttgatcaaccgcgaatgtgtaagcattggaaccgcgaccattgatgacaagtccatccgggaaaggaagatcacttcc 17346642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 46250526 - 46250607
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||||||| || | |||||||| |||||||| |||||||||||| | |||||||| ||||||||||||||| |||||    
T  46250526 ttttttggtgtaatccggttatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggca 46250607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 773 - 839
Target Start/End: Complemental strand, 15133528 - 15133462
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||||||| |||||||||||||||||| ||| | |||||||||||||||| ||||| ||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaacggacgacaag 15133462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 766 - 836
Target Start/End: Original strand, 35334079 - 35334149
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggc 836  Q
    |||||| | |||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  35334079 taaaccggatatccttcacgcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggc 35334149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 45994692 - 45994617
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    ||||||||| |||||  ||||||||  |||  |||||||||||||||||| ||||||||||||| |||||||||||    
T  45994692 ttttttggtataaactgggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgg 45994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 780 - 835
Target Start/End: Original strand, 13948587 - 13948642
Alignment:
Q  780 tccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 835  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacgg 13948642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 838
Target Start/End: Complemental strand, 13686740 - 13686690
Alignment:
Q  788 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||| ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  13686740 caactgtggagactaatctctcgagccttgtgagacccaaatggacggcaa 13686690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 766 - 816
Target Start/End: Original strand, 32005127 - 32005177
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcatt 816  Q
    |||||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  32005127 taaaccgggtatcctccgcgcataattgcggagactaatctctcgagcatt 32005177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 763 - 838
Target Start/End: Complemental strand, 18841649 - 18841573
Alignment:
Q  763 gtgtaaacccggtatcctccgcgcacaact-gcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||| |||| |||| ||| |||||| | ||||||    
T  18841649 gtgtaaaccaggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaa 18841573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 31308467 - 31308386
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||| ||||||   ||||| |||||| |||||||| |  |||||||||||| | |||||||||||| |||| |||||||    
T  31308467 ttttttgatgtaaattgggtattctccgcacacaactgagaggactaatccctcaaacattgtgggacctaaatagacggca 31308386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 838
Target Start/End: Original strand, 36990098 - 36990147
Alignment:
Q  789 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||| | |||||| |||||||||||||||||  ||||||||||||||    
T  36990098 aactgcgaatactaattcctcgagcattgtgggattcaaatggacggcaa 36990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 756 - 834
Target Start/End: Complemental strand, 2744103 - 2744025
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 834  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2744103 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacg 2744025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 4124995 - 4125076
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4124995 ttttttggtgtaaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 4125076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 7839224 - 7839305
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||| || ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7839224 tttttttgtataacccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 7839305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 756 - 839
Target Start/End: Original strand, 19715696 - 19715780
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaat-ccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||| ||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19715696 tttttttgtgtaaaccaggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaag 19715780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 13468716 - 13468797
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||| |||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  13468716 tttttgggtgtaaaccgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggca 13468797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 30936174 - 30936093
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||| |||||| |||| | ||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  30936174 ttttttggtataaaccgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggca 30936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 762 - 823
Target Start/End: Complemental strand, 39086916 - 39086855
Alignment:
Q  762 ggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggac 823  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  39086916 ggtgtaaaccaggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggac 39086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 777 - 831
Target Start/End: Original strand, 12958077 - 12958131
Alignment:
Q  777 tcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgg 12958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 8521867 - 8521793
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||||||||| | |||||| ||||||| |||||| ||| ||||||||||||||||||||||||| |||||||    
T  8521867 ttttttggtgtaaatcgggtatcttccgcgcgcaactg-ggatactaatccctcgagcattgtgggactcaaatgg 8521793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 796 - 837
Target Start/End: Original strand, 30056012 - 30056053
Alignment:
Q  796 gagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  30056012 gagactaatccctcgagcattgtggaacccaaatggacggca 30056053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 773 - 838
Target Start/End: Complemental strand, 40320249 - 40320184
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||||||| |||||| | |||||||||| ||||||||| |||||| |||||| ||||||||    
T  40320249 ggtatcctccgcgtacaactacagagactaatctctcgagcatcgtgggatccaaatagacggcaa 40320184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 764 - 835
Target Start/End: Original strand, 13005657 - 13005728
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 835  Q
    |||||||  |||||| |||||||| ||||||||||||| ||| || |||| |||||||||| ||||||||||    
T  13005657 tgtaaactaggtatcttccgcgcagaactgcggagactgatctcttgagccttgtgggacctaaatggacgg 13005728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 788 - 831
Target Start/End: Original strand, 36994503 - 36994546
Alignment:
Q  788 caactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  36994503 caactgcagagactaatccctcgagccttgtgggacccaaatgg 36994546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 839
Target Start/End: Complemental strand, 24988633 - 24988586
Alignment:
Q  792 tgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  24988633 tgcggagactaatccctcgagtattgtgggactcaaatgagcggcaag 24988586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 837
Target Start/End: Complemental strand, 15683059 - 15683018
Alignment:
Q  796 gagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggca 15683018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 29059975 - 29059894
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  29059975 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggca 29059894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 31492273 - 31492192
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  31492273 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggca 31492192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 766 - 831
Target Start/End: Original strand, 21747021 - 21747086
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21747021 taaaccaggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgg 21747086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 749 - 829
Target Start/End: Original strand, 37339697 - 37339777
Alignment:
Q  749 attagtcttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    |||||| ||||||||| |||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  37339697 attagtattttttggtataaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaat 37339777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 829
Target Start/End: Complemental strand, 28665260 - 28665187
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    |||||| ||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  28665260 tttttttgtgtaaactgggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtgggaccaaaat 28665187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 756 - 839
Target Start/End: Original strand, 19477223 - 19477303
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| |||||||||| | |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  19477223 tttttgggtgtaaaccagctatcctccgcgca--actgcggagactaatccctc-agcattgtgggacccaaatggccggcaag 19477303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 756 - 839
Target Start/End: Original strand, 11486715 - 11486798
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||| ||||||||| |||||||||||||| ||||||  |||||||||| || ||||||||||| |||||||||| |||||||    
T  11486715 tttttttgtgtaaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaag 11486798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 757 - 831
Target Start/End: Complemental strand, 31776587 - 31776513
Alignment:
Q  757 tttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||| |||||| |||||||||||| | |||||||| ||| |||||||||||| ||||||||||||||||||    
T  31776587 tttttggtataaaccaggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgg 31776513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 757 - 834
Target Start/End: Complemental strand, 45779033 - 45778956
Alignment:
Q  757 tttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 834  Q
    ||||||||||||||| ||||||||||   | ||||||||||||||||||||||||| |||||| ||| |||| |||||    
T  45779033 tttttggtgtaaaccaggtatcctccattcgcaactgcggagactaatccctcgagtattgtgagactcaaacggacg 45778956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 763 - 839
Target Start/End: Complemental strand, 20207660 - 20207584
Alignment:
Q  763 gtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||  |||||||| | || ||||||||||||||||||||||||||||||| ||| |||||||  |||||||    
T  20207660 gtgtaaaccgagtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaag 20207584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 33299249 - 33299166
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||| ||||||||| ||||| |||| |||| |||||||||||||||||| |  |||||||||| | ||||||||| ||||||    
T  33299249 tttttttgtgtaaaccgggtattctccacgcataactgcggagactaatccattaagcattgtggaatccaaatggatggcaag 33299166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 766 - 831
Target Start/End: Complemental strand, 35708006 - 35707941
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||| |||||||||| ||| ||||||| ||||||||||||||||||||||| ||| | ||||||    
T  35708006 taaaccgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgg 35707941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 28537556 - 28537479
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||| |||||| |||||||| ||||  |||||||||||||||||||||| |||||    |||||||||||| |||||    
T  28537556 ttttttggtataaaccgggtatccttcgcgtgcaactgcggagactaatccctcaagcat----ggacccaaatgggcggca 28537479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 799 - 837
Target Start/End: Complemental strand, 14545070 - 14545032
Alignment:
Q  799 actaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggca 14545032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 839
Target Start/End: Complemental strand, 24172362 - 24172296
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| |||||||| |||||||  |||||||||| ||||||||||||||| |||| ||| |||||||    
T  24172362 ggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaag 24172296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 838
Target Start/End: Original strand, 29428795 - 29428845
Alignment:
Q  788 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  29428795 caactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaa 29428845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 32470088 - 32470003
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagc--attgtgggacccaaatggacggcaag 839  Q
    ||||| ||| |||||| | |||||||||||  |||||||| | ||||||| |||||||  |||||| |||||||||||||||||||    
T  32470088 tttttgggtataaaccagatatcctccgcgtgcaactgcgaacactaatctctcgagcatattgtgagacccaaatggacggcaag 32470003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 831
Target Start/End: Original strand, 25421210 - 25421286
Alignment:
Q  754 tcttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||||||||||||  |||||||||| |  ||||||||  | |||||||||| |||| |||||||||||||||||    
T  25421210 tcttttttggtgtaaactgggtatcctccact-acaactgcaaacactaatcccttgagctttgtgggacccaaatgg 25421286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 818
Target Start/End: Original strand, 36821060 - 36821113
Alignment:
Q  765 gtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgt 818  Q
    |||||||  |||||||| |||| ||||||| |||||||||||||||||||||||    
T  36821060 gtaaaccaagtatcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 832
Target Start/End: Complemental strand, 3231381 - 3231313
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgga 832  Q
    |||||| | ||||||||||||| |||||||  ||| |||||| ||||| |||||||||||| |||||||    
T  3231381 tgtaaatcgggtatcctccgcgtacaactggtgagtctaatctctcgaacattgtgggacctaaatgga 3231313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 834
Target Start/End: Original strand, 28828756 - 28828814
Alignment:
Q  776 atcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 834  Q
    ||||||||||  |||||||| |||||||||| | |||| ||||| ||||||||||||||    
T  28828756 atcctccgcgagcaactgcgcagactaatccattgagccttgtgagacccaaatggacg 28828814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 831
Target Start/End: Original strand, 42741797 - 42741854
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||||||||| ||||||| |||| |||||||||||| ||| | ||||||||||||    
T  42741797 ggtatcctccgcgcgcaactgcagagattaatccctcgagtattat-ggacccaaatgg 42741854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 830
Target Start/End: Complemental strand, 1424745 - 1424669
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccg--cgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 830  Q
    |||||||||||||| | ||| |||| ||  ||| |||||||||||||||||| ||| ||  ||||||||||||||||    
T  1424745 ttttttggtgtaaatcgggtgtccttcgtgcgcgcaactgcggagactaatctctcaagtcttgtgggacccaaatg 1424669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 813
Target Start/End: Original strand, 49118220 - 49118277
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagc 813  Q
    |||||| ||||||||| |||| || | ||||| |||||| ||||||||||||||||||    
T  49118220 tttttttgtgtaaaccgggtaaccactgcgcaaaactgcagagactaatccctcgagc 49118277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 5123469 - 5123550
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5123469 ttttttggtgtaaacagggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 5123550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 10592097 - 10592016
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  10592097 ttttttggtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggca 10592016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 756 - 829
Target Start/End: Original strand, 22187969 - 22188042
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  22187969 ttttttggtgtaagccgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaat 22188042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 31113504 - 31113429
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||| ||||||| | |||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  31113504 tttttttgtgtaaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgg 31113429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 25983835 - 25983752
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| |||||||||| ||||||||||| |  |||||||||||||||||| ||||| |||| |||||| ||||||| |||||||    
T  25983835 tttttgggtgtaaaccgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaag 25983752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 766 - 837
Target Start/End: Original strand, 30784967 - 30785038
Alignment:
Q  766 taaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||| |||||||||||||| ||||||||||||||||||||| || ||||||| |||| ||||||| ||||    
T  30784967 taaaccaggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggca 30785038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 756 - 834
Target Start/End: Complemental strand, 29553709 - 29553631
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 834  Q
    ||||||| ||||| |  |||||||||| ||||||||||| |||||||||| || ||||||| |||||||||||||||||    
T  29553709 ttttttgttgtaatctgggtatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacg 29553631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 789 - 838
Target Start/End: Complemental strand, 36213033 - 36212984
Alignment:
Q  789 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaa 36212984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 760 - 838
Target Start/End: Original strand, 373739 - 373817
Alignment:
Q  760 ttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||||   ||||||||||| || |||||||||||| |||||||| || ||||||  ||||||||| ||||||||    
T  373739 ttggtgtaaattgggtatcctccgtgcgcaactgcggagattaatcccttgaacattgtatgacccaaatagacggcaa 373817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 698
Target Start/End: Complemental strand, 6796848 - 6796801
Alignment:
Q  651 tggtggaattggacagtttgttccatatactccatcttgccatgaatt 698  Q
    ||||||||| ||||||||||||||   |||||||||||||||||||||    
T  6796848 tggtggaataggacagtttgttcccagtactccatcttgccatgaatt 6796801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 756 - 829
Target Start/End: Complemental strand, 8757514 - 8757441
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8757514 ttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaat 8757441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 20861418 - 20861337
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  20861418 ttttttggtataaactgggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggca 20861337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 27763891 - 27763810
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||| ||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27763891 tttttttgtgtaaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggca 27763810  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 756 - 837
Target Start/End: Original strand, 30995936 - 30996017
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  30995936 tttttaggtgtaaaccagatatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggca 30996017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 25224869 - 25224786
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| |||||||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  25224869 tttttgggtgtaaaccgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaag 25224786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 756 - 835
Target Start/End: Complemental strand, 1642776 - 1642697
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 835  Q
    |||||||||||||| | | |||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||    
T  1642776 ttttttggtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacgg 1642697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 756 - 839
Target Start/End: Original strand, 48204282 - 48204365
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| |||||||| | |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||| ||||    
T  48204282 tttttgggtgtaaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaag 48204365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 55123267 - 55123192
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    ||||||||| |||| | |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  55123267 ttttttggtataaatcaggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgg 55123192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 38331299 - 38331215
Alignment:
Q  756 ttttttggt-gtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||||||| ||||| | |||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  38331299 ttttttggttgtaaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaag 38331215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 757 - 839
Target Start/End: Complemental strand, 22288404 - 22288322
Alignment:
Q  757 tttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||||||| ||| ||| ||||||  || |||||||||| ||||    
T  22288404 ttttttgtgtaaaccgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaag 22288322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 762 - 818
Target Start/End: Original strand, 40318426 - 40318482
Alignment:
Q  762 ggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgt 818  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||    
T  40318426 ggtgtaaaacgggtatcctccgcgcgcaactgcggagactaatccctcgaacattgt 40318482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 756 - 838
Target Start/End: Original strand, 44941236 - 44941317
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||| |||||  | |||||||||||| ||||||||||||||||| ||||||||||  ||||| |||||||| ||||||    
T  44941236 ttttttggtataaactggatatcctccgcgcgcaactgcggagactaat-cctcgagcataatgggatccaaatgggcggcaa 44941317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 838
Target Start/End: Complemental strand, 15446127 - 15446084
Alignment:
Q  795 ggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  15446127 ggagactaatccgtcgagcattgtgagacccaaatggacggcaa 15446084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 22288690 - 22288643
Alignment:
Q  757 tttttggtgtaaacccggtatcctccgcgcacaactgcggagactaat 804  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  22288690 ttttttgtgtaaaccgggtatcctccgcgcacaactgcagagactaat 22288643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 40294782 - 40294699
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||||||| | ||||||||  | || ||||||||||||||||||| ||||| |||||||||  ||||||  |||||||    
T  40294782 ttttttggtgtaaatcgggtatcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaag 40294699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 756 - 838
Target Start/End: Complemental strand, 46725594 - 46725513
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||| ||||||||||  |||||||||||||  |||||  |||||||||||||| |||||||| ||||||| |||||| ||||    
T  46725594 tttttgggtgtaaaccaagtatcctccgcgcgtaactgaagagactaatccctcaagcattgt-ggacccagatggacagcaa 46725513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 838
Target Start/End: Complemental strand, 15283200 - 15283159
Alignment:
Q  797 agactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggcaa 15283159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 773 - 830
Target Start/End: Complemental strand, 39950365 - 39950308
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 830  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||| ||| |||||||    
T  39950365 ggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatg 39950308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 25739258 - 25739182
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaac-tgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||||||||||| |||||||||||| | |||| |||||||||||||   |||||  || ||||||||||||||    
T  25739258 ttttttggtgtaaaccgggtatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgg 25739182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 54634187 - 54634144
Alignment:
Q  333 taaattaattttaaacgatcttaactattgatttaaataagacg 376  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||    
T  54634187 taaatcaattttaaacgattttaactattgatttaaatcagacg 54634144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 839
Target Start/End: Original strand, 48210948 - 48211014
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||| ||||||  ||||||||||||  ||| ||||||| ||||||||||| |||| |||||||||    
T  48210948 ggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaag 48211014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 755 - 837
Target Start/End: Complemental strand, 26502 - 26420
Alignment:
Q  755 cttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  26502 cttttttggtgtaaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggca 26420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 756 - 830
Target Start/End: Complemental strand, 16756252 - 16756178
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 830  Q
    |||||||||||||| |  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16756252 ttttttggtgtaaatcgagtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatg 16756178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 764 - 837
Target Start/End: Original strand, 42297421 - 42297494
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42297421 tgtaaactaggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggca 42297494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 754 - 838
Target Start/End: Complemental strand, 15642628 - 15642543
Alignment:
Q  754 tcttttttgg-tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||||| |||||| | |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  15642628 tcttttttggatgtaaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaa 15642543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 36806781 - 36806700
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||| |||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  36806781 tttttgggtgtaaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggca 36806700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 756 - 837
Target Start/End: Complemental strand, 49071747 - 49071666
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||| | | |||| ||||| | |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  49071747 ttttttggtgtaaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaatgaacggca 49071666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 768 - 837
Target Start/End: Complemental strand, 28724830 - 28724761
Alignment:
Q  768 aacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||| |||||||||||||| ||| |||||||||||||||||||| |||||| |||| |||||||||||||    
T  28724830 aaccgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggca 28724761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 773 - 836
Target Start/End: Original strand, 9780977 - 9781040
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggc 836  Q
    ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  9780977 ggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggc 9781040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 763 - 821
Target Start/End: Original strand, 18428120 - 18428178
Alignment:
Q  763 gtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtggg 821  Q
    ||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  18428120 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggg 18428178  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 722
Target Start/End: Original strand, 8571806 - 8571971
Alignment:
Q  557 aaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtgg 656  Q
    ||||||| || || ||||| |||||||| || || || ||| || | |||||||| ||||||||||||||||| |  || || |||||||  || |||||    
T  8571806 aaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtgg 8571905  T
Q  657 aattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcct 722  Q
    ||| |||||  |||||||| | ||||||||||   |||| ||||| |||||||| |||||||||||    
T  8571906 aatgggacatgttgttccaaacactccatcttcgtatgagttccttctctgctggactccattcct 8571971  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 762 - 839
Target Start/End: Complemental strand, 46864255 - 46864178
Alignment:
Q  762 ggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||| | ||||||||  |||| ||||||| |||||||||||||||| |||||||  ||||||||||||||||||    
T  46864255 ggtgtaaatcaggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaag 46864178  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 756 - 831
Target Start/End: Complemental strand, 22022290 - 22022215
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||| ||||| ||  |||||||||| ||  ||||||||||||||||||||||||  ||||||||||||||||||    
T  22022290 tttttttgtgtatactgggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgg 22022215  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 756 - 839
Target Start/End: Complemental strand, 44913279 - 44913196
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||| |||||||   ||||||||| ||||  |||||| |||||||||| |||||||||||||||||||| |||| |||||||    
T  44913279 tttttttgtgtaaattaggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggcaag 44913196  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 796 - 837
Target Start/End: Complemental strand, 12035680 - 12035639
Alignment:
Q  796 gagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggca 12035639  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 812
Target Start/End: Original strand, 7242794 - 7242834
Alignment:
Q  772 cggtatcctccgcgcacaactgcggagactaatccctcgag 812  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  7242794 cggtatcttccgcgcgcaactgcggagactaatccctcgag 7242834  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 824
Target Start/End: Complemental strand, 32534244 - 32534184
Alignment:
Q  764 tgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacc 824  Q
    |||||||| ||||||||| |||| ||| |||||||||||| | ||||||||||||| ||||    
T  32534244 tgtaaaccaggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgagacc 32534184  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 791 - 830
Target Start/End: Original strand, 6607700 - 6607739
Alignment:
Q  791 ctgcggagactaatccctcgagcattgtgggacccaaatg 830  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6607700 ctgcggagactaatccctcgagcattgtgagacctaaatg 6607739  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 831
Target Start/End: Complemental strand, 10367642 - 10367599
Alignment:
Q  788 caactgcggagactaatccctcgagcattgtgggacccaaatgg 831  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  10367642 caactgcggagattaatccttcgagcattgttggacccaaatgg 10367599  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 784 - 815
Target Start/End: Complemental strand, 21774702 - 21774671
Alignment:
Q  784 cgcacaactgcggagactaatccctcgagcat 815  Q
    ||||||||||||||||||||||||||||||||    
T  21774702 cgcacaactgcggagactaatccctcgagcat 21774671  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 839
Target Start/End: Complemental strand, 10750750 - 10750684
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    ||||||||| |||| ||||||   ||||||||||||||| ||||||| || |||||||| |||||||    
T  10750750 ggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaag 10750684  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 829
Target Start/End: Original strand, 39547335 - 39547408
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    ||||| |||||||||| |  |||||| |||| |||||||||||| |||||| |||| ||||||| |||| ||||    
T  39547335 tttttgggtgtaaaccggaaatcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaat 39547408  T

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Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 756 - 836
Target Start/End: Original strand, 12836868 - 12836948
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggc 836  Q
    ||||| ||| |||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  12836868 tttttgggtataaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggc 12836948  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 759 - 837
Target Start/End: Complemental strand, 12411315 - 12411237
Alignment:
Q  759 tttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    |||||| |||||| ||||||| |||||| |||||| ||||||||||||||| |||||||||||||  |||||| |||||    
T  12411315 tttggtataaaccgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggca 12411237  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 756 - 830
Target Start/End: Complemental strand, 21910374 - 21910301
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 830  Q
    ||||| |||||||||| |||||||||||||  ||||||||||||||||||||| ||| ||||||||||| |||||    
T  21910374 tttttgggtgtaaaccaggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatg 21910301  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 773 - 834
Target Start/End: Complemental strand, 28099396 - 28099335
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacg 834  Q
    |||||||||||| | ||||||||||||||||||||||||||||| ||| || ||||||||||    
T  28099396 ggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacg 28099335  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 775 - 835
Target Start/End: Complemental strand, 9536918 - 9536858
Alignment:
Q  775 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacgg 835  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacgg 9536858  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 838
Target Start/End: Original strand, 21028843 - 21028895
Alignment:
Q  786 cacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  21028843 cacaactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaa 21028895  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 786 - 838
Target Start/End: Original strand, 21028980 - 21029032
Alignment:
Q  786 cacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  21028980 cacaactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaa 21029032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 799 - 837
Target Start/End: Complemental strand, 423782 - 423744
Alignment:
Q  799 actaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggca 423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 775 - 837
Target Start/End: Complemental strand, 31412273 - 31412211
Alignment:
Q  775 tatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggca 837  Q
    ||||||||| || |||||| ||||||||||  |||||||||||||| |||||||||| |||||    
T  31412273 tatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggca 31412211  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 774 - 829
Target Start/End: Complemental strand, 17177290 - 17177235
Alignment:
Q  774 gtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaat 829  Q
    ||||||||||||||||| | |||||| |||||||||||| |||||| || ||||||    
T  17177290 gtatcctccgcgcacaattacggagattaatccctcgagtattgtgagatccaaat 17177235  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 838
Target Start/End: Complemental strand, 278561 - 278479
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||| ||||| | ||||||||||| |  |||||| |  ||||||||||| |||  |||||||||| |||||||||||||    
T  278561 ttttttggggtaaatcgggtatcctccgtgtgcaactgtgacgactaatcccttgagttttgtgggacctaaatggacggcaa 278479  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 788 - 838
Target Start/End: Complemental strand, 28933276 - 28933226
Alignment:
Q  788 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||||| |||| || |||||||||||||| |||||||||| ||||||    
T  28933276 caactgcggatactattcactcgagcattgtggaacccaaatgggcggcaa 28933226  T

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Target: scaffold0013 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 756 - 830
Target Start/End: Original strand, 29123 - 29197
Alignment:
Q  756 ttttttggtgtaaacccggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatg 830  Q
    |||||| ||||||| | |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  29123 tttttttgtgtaaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaatg 29197  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 773 - 839
Target Start/End: Original strand, 27213 - 27279
Alignment:
Q  773 ggtatcctccgcgcacaactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 839  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||| || |||||||| |||||||    
T  27213 ggtatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaag 27279  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 838
Target Start/End: Original strand, 16065 - 16108
Alignment:
Q  795 ggagactaatccctcgagcattgtgggacccaaatggacggcaa 838  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  16065 ggagactaatccgtcgagcattgtgagacccaaatggacggcaa 16108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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