View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_71 (Length: 367)
Name: NF8981_high_71
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_71 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 42306902 - 42307238
Alignment:
| Q |
15 |
tgttcacgttatgccattcataatccatgaggggattggaagctacctggccccaacccatcccctccaaaacgnnnnnnnntcatgcttatatcctgaa |
114 |
Q |
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| T |
42306902 |
tgttcacgttatgccactcataatccatgaggggattggaagctacctggccccaacccatcccctccaaaacgaaaaaaaatcatgcttatatcctgaa |
42307001 |
T |
|
| Q |
115 |
tttggcaagaaaataagaactttaattatgatgatactgcctttgcctataattaccaagtatcattataataacgtaaaacaaaataccatcaatggtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307002 |
tttggcaagaaaataagaactttaattatgatgatactgcctttgcctataattaccaagtatcattataataacgtaaaacaaaataccatcaatggtt |
42307101 |
T |
|
| Q |
215 |
tcaaaacgctcattagctcacacacactcacacaatttatggtaagataagatgtgtaatttatataaccgatttgattgaaattccactaaaagtaaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307102 |
tcaaaacgctcattagctcacacacactcacacaatttatggtaagataagatgtgtaatttatataaccgatttgattgaaattccactaaaagtaaaa |
42307201 |
T |
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| Q |
315 |
atagattctcagaaggaacttcaacttaaagaacctt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42307202 |
atagattctcagaaggaacttcaacttaaagaacctt |
42307238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 16935837 - 16935946
Alignment:
| Q |
15 |
tgttcacgttatgccattcataatccatgaggggattggaagctacctggccccaacccatcccctccaaaacgnnnnnnnntcatgcttatatcctgaa |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
16935837 |
tgttcacgttatgccactcataatccatgaggggattggaagctacctggccccaacccatcccctccaagaag---aaaaatcatgcttatatcctgaa |
16935933 |
T |
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| Q |
115 |
tttggcaagaaaa |
127 |
Q |
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||||||||||||| |
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| T |
16935934 |
tttggcaagaaaa |
16935946 |
T |
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