View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_75 (Length: 353)
Name: NF8981_high_75
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 340
Target Start/End: Complemental strand, 44638716 - 44638399
Alignment:
| Q |
23 |
attaatgaaagggactttattatttgcttgctgttccgactctaaatatataattctatatgtttatgtcaatggaatataagattaataattaatgagg |
122 |
Q |
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| T |
44638716 |
attaatgaaagggaatttattatttgcttgctgttccgactctaaatatataattctatatgtttatgtcaatggaatataagattaataattaatgagg |
44638617 |
T |
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| Q |
123 |
gcgattattatcaagaatacaatgtcttttttaactcttaccattggtcagctacttaccttataattcaagctaacatacaactcagtttgaggtgtta |
222 |
Q |
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| T |
44638616 |
gcgattattatcaagaatacaatgtcttttttaactcttaccattggtcagctacttaccttataattcaagctaacatacaactcagtttgaggtgtta |
44638517 |
T |
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| Q |
223 |
ttctcatcttctctgtattttcattgttgacaattaattgcttttgtggatcaatattctattactgttgcaggtgatttaatttatgatgatgattata |
322 |
Q |
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| T |
44638516 |
ttctcatcttctctgtattttcattgttgactattaattgcttttgtggatcaatattctattactgttgcaggtgatttaatttatgttgatgattata |
44638417 |
T |
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| Q |
323 |
taatctttgttagtctct |
340 |
Q |
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| T |
44638416 |
taatctttgttagtctct |
44638399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 79 - 334
Target Start/End: Complemental strand, 44650847 - 44650586
Alignment:
| Q |
79 |
tatatgtttatgtcaatggaatataagattaataattaatgag------ggcgattattatcaagaatacaatgtcttttttaactcttaccattggtca |
172 |
Q |
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| T |
44650847 |
tatatgtttatgtcaatgaaatatacgatttataattaataatattggtggcgattaataccaaaaatactatgtcttttttaactcttaccgttcatca |
44650748 |
T |
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| Q |
173 |
gctacttaccttataattcaagctaacatacaactcagtttgaggtgttattctcatcttctctgtattttcattgttgacaattaattgcttttgtgga |
272 |
Q |
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| T |
44650747 |
gctacttaacttataattcaagctaactttctactcagtttgaggtgttattctcatcttctctgtattttggttgttgacaattaattgcttttgtgga |
44650648 |
T |
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| Q |
273 |
tcaatattctattactgttgcaggtgatttaatttatgatgatgattatataatctttgtta |
334 |
Q |
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| T |
44650647 |
tcaataatgaattactcttgcaggtgatttaagttatgttaatgattgtataatctttgtta |
44650586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 44651882 - 44651981
Alignment:
| Q |
55 |
gttccgactctaaatatataattctatatgtttatgtcaatggaatataagattaataattaatgagggcgattattatcaagaatacaatgtctttttt |
154 |
Q |
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| T |
44651882 |
gttccgactctaaatatataattatatatgtttatgtcaatggaatataacattaataattaatggttgcgattattatcaagaatataatttcattttt |
44651981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 44680736 - 44680805
Alignment:
| Q |
86 |
ttatgtcaatggaatataagattaa--taattaatgagggcgattattatcaagaatacaatgtcttttt |
153 |
Q |
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| T |
44680736 |
ttatgtcaatggaatataagattaaaataattaatagtggcgattaatatcaagaatacaatgtcttttt |
44680805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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