View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_79 (Length: 340)
Name: NF8981_high_79
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_79 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 28626207 - 28625990
Alignment:
| Q |
16 |
aaaccagtattgattgtttatggcgctcatttatatatggaaacgctatttatggctcaaccttaaatagcgctttaaaaaggctattgtaagtttatga |
115 |
Q |
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| T |
28626207 |
aaaccagtattgattgtttatggcgctcatttatatatggaaacgctatttatggctcaaccttaaatagcgctttaaaaacgctatcgtaagtttatga |
28626108 |
T |
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| Q |
116 |
aagatagcgtacgtttatgaaagatagcgtttatatatttaaaatagcgctatttattgtccaaattcattcagccaagacccatgttcgatcctctggg |
215 |
Q |
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| T |
28626107 |
aagatagcgtaggtttatgaaagataacgtttatatatttaaaatagcgctatttattgtccaaattcattcagccaagacccatgttcgatcctctggg |
28626008 |
T |
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| Q |
216 |
ggcagagcattttattta |
233 |
Q |
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| T |
28626007 |
ggcagagcattttattta |
28625990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 28625947 - 28625870
Alignment:
| Q |
238 |
ccatatgtaacaaaaagttctattttgttggatatatcctccaaatttaaaaccagaataaattaatgatttaaatgt |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28625947 |
ccatatgtcacaaaaagttctattttgttggatatatcctccaaatttaaaaccagaataaattaatgatttaaatgt |
28625870 |
T |
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