View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_8 (Length: 803)

Name: NF8981_high_8
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_8
NF8981_high_8
[»] scaffold0775 (1 HSPs)
scaffold0775 (18-784)||(1140-1906)
[»] chr1 (3 HSPs)
chr1 (655-779)||(25148482-25148606)
chr1 (659-779)||(18822617-18822737)
chr1 (586-624)||(31683329-31683367)
[»] chr5 (6 HSPs)
chr5 (655-733)||(16507003-16507081)
chr5 (693-728)||(5198985-5199020)
chr5 (598-628)||(10464124-10464154)
chr5 (586-624)||(43447428-43447466)
chr5 (587-628)||(8336715-8336756)
chr5 (585-626)||(36876243-36876284)
[»] chr4 (15 HSPs)
chr4 (659-757)||(47849054-47849152)
chr4 (674-728)||(11082166-11082220)
chr4 (680-728)||(40887424-40887472)
chr4 (683-728)||(12891120-12891165)
chr4 (671-728)||(46438262-46438319)
chr4 (693-728)||(41931772-41931807)
chr4 (585-624)||(55811541-55811580)
chr4 (584-626)||(13793511-13793553)
chr4 (597-631)||(19522594-19522628)
chr4 (591-624)||(10458875-10458908)
chr4 (361-418)||(13401090-13401147)
chr4 (591-624)||(19327050-19327083)
chr4 (587-624)||(28426793-28426830)
chr4 (671-728)||(30706115-30706172)
chr4 (587-624)||(36703881-36703918)
[»] chr7 (1 HSPs)
chr7 (341-424)||(46613353-46613437)
[»] chr8 (6 HSPs)
chr8 (400-447)||(29723170-29723217)
chr8 (693-734)||(22500081-22500122)
chr8 (671-728)||(35553792-35553849)
chr8 (693-728)||(45131959-45131994)
chr8 (693-723)||(21177121-21177151)
chr8 (671-728)||(39491333-39491390)
[»] chr6 (4 HSPs)
chr6 (693-728)||(21602620-21602655)
chr6 (591-628)||(15720932-15720969)
chr6 (693-728)||(3382296-3382331)
chr6 (671-728)||(6318439-6318496)
[»] chr3 (3 HSPs)
chr3 (372-450)||(9806922-9807000)
chr3 (418-481)||(54362256-54362319)
chr3 (671-728)||(48565073-48565130)
[»] chr2 (3 HSPs)
chr2 (354-445)||(37991720-37991811)
chr2 (394-480)||(16586053-16586139)
chr2 (398-447)||(15247333-15247382)
[»] scaffold0014 (1 HSPs)
scaffold0014 (584-626)||(123522-123564)


Alignment Details
Target: scaffold0775 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 18 - 784
Target Start/End: Complemental strand, 1906 - 1140
Alignment:
Q  18 tttacggagggaatttatgtcacaaaagtttcttgtggcacaaaaccttccataagttttcaattatcacttcactttttgtcgattccttcaagttcct 117  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1906 tttatggagggaatttatgtcacaaaagtttcttgtggcataaaaccttccataagttttcaattatcacttcactttttgtcgattccttcaagttcct 1807  T
Q  118 aatggtaattacgagatcatcacgagttagaatcatgtgttttgatcattgagtttattgtttcagatcattcgatcataaatactacaataattttaag 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1806 aatggtaattaggagatcatcacgagttagaatcatgtgttttgatcattgagtttattgtttcagatcattcgatcataaatactacaataattttaag 1707  T
Q  218 attgaataagccaagattgaaatattttgaataaactaaattggcatggtggcggtatctagtgtgatcgtcgccgatgaaagtatttcagttaagaaac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  1706 attgaataagccaagattgaaatattttgaataaactaaattggcatggtggcggtatctagtgggatcgtcgccgatgaaagtatttcagttaaaaaac 1607  T
Q  318 aaatttattggttctaattttaataaatatgttttagtccttctaaatatactaactttcaattttcgtccttttgaaaattttcttcaatttttggtcc 417  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  1606 aaatttattggttctaattttaataaatatgttttagtccttttaaatatactaactttcagttttcatccttttaaaaattttcttcaatttttggtcc 1507  T
Q  418 ctctaaatattatgttttcaattttagtccctgatattttataaaacttcatgtttcgtattctaaatgacnnnnnnnnatgacatataattgattagac 517  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  1506 ctctaaatattatattttcaattttagtccctgatattttataaaacttcatgtttcgtattctaaatgac-tttttttatgacatataattgattagac 1408  T
Q  518 ctgaaaatattaatagttaaataatttaactattcaatctttatcttaaaaggaa-ctattcaatctttattaatttaacggttaaatatgtttttggtc 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||||||||||||    
T  1407 ctgaaaatattaatagttaaataatttaactattcaatctttatcttaaaaaaaagctattcaatctttattaatttaagggttaaatatgtttttggtc 1308  T
Q  617 cccataaaatagaggagaaggaaaggcgtaggcttgcatgtgtgaggagtttcttcttatatctgattggatgtacgttgtttggtgataaaagcaacaa 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1307 cccataaaatagaggagaaggaaaggcgtaggcttgcatgtgtgaggagtttcttcttatatctgattggatgtacgttgtttggtgataaaagcaacaa 1208  T
Q  717 acacatcgagttaatatacctgccgatgatggaagactttgatttgatgaatcagtactcgtgagatg 784  Q
    | ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||||    
T  1207 atacatcgagttaatatacctgcagacgatggaaaactttgatttgatgaatcagtactcatgagatg 1140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 655 - 779
Target Start/End: Original strand, 25148482 - 25148606
Alignment:
Q  655 tgtgtgaggagtttcttcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagttaatatacctgccgatgatggaagact 754  Q
    |||||||| |||||| ||||||||||| || |||||||||||||| |||||||||||||||||||  ||||||||||||| || | ||||||||| ||||    
T  25148482 tgtgtgagaagtttcctcttatatctgctttgatgtacgttgtttagtgataaaagcaacaaacatgtcgagttaatatatctacagatgatggaggact 25148581  T
Q  755 ttgatttgatgaatcagtactcgtg 779  Q
    |||||  |||||| |||||||||||    
T  25148582 ttgatacgatgaaccagtactcgtg 25148606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 659 - 779
Target Start/End: Original strand, 18822617 - 18822737
Alignment:
Q  659 tgaggagtttcttcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagttaatatacctgccgatgatggaagactttga 758  Q
    ||||||||||  ||||||||||| ||||||||| |||||||| ||||||||||||||| |||  |  ||| |||||||||| ||| ||||| |   |||     
T  18822617 tgaggagttttctcttatatctgcttggatgtatgttgtttgatgataaaagcaacaagcactccaggttgatatacctgcagataatggaggcgcttgg 18822716  T
Q  759 tttgatgaatcagtactcgtg 779  Q
    || ||||||||||||||||||    
T  18822717 ttcgatgaatcagtactcgtg 18822737  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 624
Target Start/End: Complemental strand, 31683367 - 31683329
Alignment:
Q  586 attaatttaacggttaaatatgtttttggtccccataaa 624  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  31683367 attaatttaagggttaaatatgtttttggtccctataaa 31683329  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 655 - 733
Target Start/End: Original strand, 16507003 - 16507081
Alignment:
Q  655 tgtgtgaggagtttcttcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagttaatat 733  Q
    ||||||||||||||||| ||||||||  | |||||||||||||||| || ||| |||||||||||||| ||||||||||    
T  16507003 tgtgtgaggagtttcttgttatatctcctcggatgtacgttgtttgctggtaagagcaacaaacacatggagttaatat 16507081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 728
Target Start/End: Original strand, 5198985 - 5199020
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    |||||||||||||| |||||||||||||||||||||    
T  5198985 gttgtttggtgatagaagcaacaaacacatcgagtt 5199020  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 598 - 628
Target Start/End: Complemental strand, 10464154 - 10464124
Alignment:
Q  598 gttaaatatgtttttggtccccataaaatag 628  Q
    |||||||||||||||||||||||||||||||    
T  10464154 gttaaatatgtttttggtccccataaaatag 10464124  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 624
Target Start/End: Complemental strand, 43447466 - 43447428
Alignment:
Q  586 attaatttaacggttaaatatgtttttggtccccataaa 624  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  43447466 attaatttaagggttaaatatgtttttggtccctataaa 43447428  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 628
Target Start/End: Original strand, 8336715 - 8336756
Alignment:
Q  587 ttaatttaacggttaaatatgtttttggtccccataaaatag 628  Q
    ||||||||| |||||||||||||||||||||  |||||||||    
T  8336715 ttaatttaagggttaaatatgtttttggtccttataaaatag 8336756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 626
Target Start/End: Complemental strand, 36876284 - 36876243
Alignment:
Q  585 tattaatttaacggttaaatatgtttttggtccccataaaat 626  Q
    |||||||| || |||||||||||||||||||||| |||||||    
T  36876284 tattaattcaagggttaaatatgtttttggtccctataaaat 36876243  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 757
Target Start/End: Complemental strand, 47849152 - 47849054
Alignment:
Q  659 tgaggagtttcttcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagttaatatacctgccgatgatggaagactttg 757  Q
    |||||||||||||  |||||||  |  ||| |||||||||||||||||| |||||||||||||||||| | ||||||||   ||||||||| |||||||    
T  47849152 tgaggagtttcttggtatatctcctcagatctacgttgtttggtgataagagcaacaaacacatcgaggtgatataccttgagatgatggaggactttg 47849054  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 728
Target Start/End: Complemental strand, 11082220 - 11082166
Alignment:
Q  674 tatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    |||||||  ||||||||  ||||||||||||||||||||||||||||||||||||    
T  11082220 tatatcttgttggatgtttgttgtttggtgataaaagcaacaaacacatcgagtt 11082166  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 40887472 - 40887424
Alignment:
Q  680 tgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||||    
T  40887472 tgattggatgcttgttgtttggtgataaaagcaacaaacacatcgagtt 40887424  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 728
Target Start/End: Original strand, 12891120 - 12891165
Alignment:
Q  683 ttggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||    
T  12891120 ttggatgtttgttgtttggtgataaaagcaacaaacgcatcgagtt 12891165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 728
Target Start/End: Original strand, 46438262 - 46438319
Alignment:
Q  671 tcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||  |||||||   |||||||||||||| |||||||||||||||||||||    
T  46438262 tcttatatcttgttggatgcttgttgtttggtgatagaagcaacaaacacatcgagtt 46438319  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 728
Target Start/End: Complemental strand, 41931807 - 41931772
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    |||||||||||||| |||||||||||||||||||||    
T  41931807 gttgtttggtgatagaagcaacaaacacatcgagtt 41931772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 624
Target Start/End: Complemental strand, 55811580 - 55811541
Alignment:
Q  585 tattaatttaacggttaaatatgtttttggtccccataaa 624  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  55811580 tattaatttaagggttaaatatgtttttggtccctataaa 55811541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 626
Target Start/End: Original strand, 13793511 - 13793553
Alignment:
Q  584 ttattaatttaacggttaaatatgtttttggtccccataaaat 626  Q
    |||||||||||| ||||||||||||||||| |||| |||||||    
T  13793511 ttattaatttaagggttaaatatgtttttgatcccaataaaat 13793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 631
Target Start/End: Original strand, 19522594 - 19522628
Alignment:
Q  597 ggttaaatatgtttttggtccccataaaatagagg 631  Q
    |||||||||||||||||||||| ||||||||||||    
T  19522594 ggttaaatatgtttttggtccctataaaatagagg 19522628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 624
Target Start/End: Original strand, 10458875 - 10458908
Alignment:
Q  591 tttaacggttaaatatgtttttggtccccataaa 624  Q
    ||||| ||||||||||||||||||||||||||||    
T  10458875 tttaagggttaaatatgtttttggtccccataaa 10458908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 13401090 - 13401147
Alignment:
Q  361 taaatatactaactttcaattttcgtccttttgaaaattttcttcaatttttggtccc 418  Q
    ||||||||||||||||  ||||| |||| | | ||||||||||||||||||| |||||    
T  13401090 taaatatactaacttttcattttagtccctctaaaaattttcttcaattttttgtccc 13401147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 624
Target Start/End: Complemental strand, 19327083 - 19327050
Alignment:
Q  591 tttaacggttaaatatgtttttggtccccataaa 624  Q
    ||||| ||||||||||||||||||||||||||||    
T  19327083 tttaagggttaaatatgtttttggtccccataaa 19327050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Complemental strand, 28426830 - 28426793
Alignment:
Q  587 ttaatttaacggttaaatatgtttttggtccccataaa 624  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  28426830 ttaatttaagggttaaatatgtttttggtccctataaa 28426793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 728
Target Start/End: Original strand, 30706115 - 30706172
Alignment:
Q  671 tcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||  |||||||   |||||||||||||| ||||||||||| |||||||||    
T  30706115 tcttatatcttgttggatgcttgttgtttggtgatagaagcaacaaacgcatcgagtt 30706172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Complemental strand, 36703918 - 36703881
Alignment:
Q  587 ttaatttaacggttaaatatgtttttggtccccataaa 624  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  36703918 ttaatttaagggttaaatatgtttttggtccctataaa 36703881  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 46613353 - 46613437
Alignment:
Q  341 taaatatgttttag-tccttctaaatatactaactttcaattttcgtccttttgaaaattttcttcaatttttggtccctctaaa 424  Q
    |||||||||||| | ||||| |||||||||||| |||   |||| |||||| | |||||||||||||||||||||||||| ||||    
T  46613353 taaatatgtttttggtccttataaatatactaattttttgttttagtccttctaaaaattttcttcaatttttggtccctataaa 46613437  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 29723217 - 29723170
Alignment:
Q  400 ttcttcaatttttggtccctctaaatattatgttttcaattttagtcc 447  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  29723217 ttctttaatttttggtccctttaaatattatgttttcaatttcagtcc 29723170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 734
Target Start/End: Original strand, 22500081 - 22500122
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatcgagttaatata 734  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  22500081 gttgtttggtgataaaagcaacaaacgcatcgagttgatata 22500122  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 728
Target Start/End: Original strand, 35553792 - 35553849
Alignment:
Q  671 tcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||  |||||||   |||||||||||||| |||||||||||||||||||||    
T  35553792 tcttatatcttgttggatgcttgttgtttggtgatagaagcaacaaacacatcgagtt 35553849  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 728
Target Start/End: Original strand, 45131959 - 45131994
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    |||||||||||||| |||||||||||||||||||||    
T  45131959 gttgtttggtgatagaagcaacaaacacatcgagtt 45131994  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 693 - 723
Target Start/End: Complemental strand, 21177151 - 21177121
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatc 723  Q
    |||||||||||||||||||||||||||||||    
T  21177151 gttgtttggtgataaaagcaacaaacacatc 21177121  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 728
Target Start/End: Original strand, 39491333 - 39491390
Alignment:
Q  671 tcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||  |||||||   |||||||||||||||||| ||||||| |||||||||    
T  39491333 tcttatatcttgttggatgcttgttgtttggtgataaaagtaacaaacgcatcgagtt 39491390  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 693 - 728
Target Start/End: Original strand, 21602620 - 21602655
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||||||||||||||||||||||||||||    
T  21602620 gttgtttggtgataaaagcaacaaacacatcgagtt 21602655  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 628
Target Start/End: Original strand, 15720932 - 15720969
Alignment:
Q  591 tttaacggttaaatatgtttttggtccccataaaatag 628  Q
    |||||||||||||||||||||||||||| |||||||||    
T  15720932 tttaacggttaaatatgtttttggtccctataaaatag 15720969  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 728
Target Start/End: Original strand, 3382296 - 3382331
Alignment:
Q  693 gttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    |||||||||||||| |||||||||||||||||||||    
T  3382296 gttgtttggtgatagaagcaacaaacacatcgagtt 3382331  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 728
Target Start/End: Complemental strand, 6318496 - 6318439
Alignment:
Q  671 tcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||  |||||||   |||||||||||||| ||||||||||| |||||||||    
T  6318496 tcttatatcttgttggatgcttgttgtttggtgatagaagcaacaaacgcatcgagtt 6318439  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 450
Target Start/End: Complemental strand, 9807000 - 9806922
Alignment:
Q  372 actttcaattttcgtccttttgaaaattttcttcaatttttggtccctctaaatattatgttttcaattttagtccctg 450  Q
    ||||||| |||| |||| | | |||||||  ||| |||||| |||||| |||||||| |||||||||||||||||||||    
T  9807000 actttcagttttagtccctctaaaaatttctttcgattttttgtccctgtaaatattctgttttcaattttagtccctg 9806922  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 54362319 - 54362256
Alignment:
Q  418 ctctaaatattatgttttcaattttagtccctgatattttataaaacttcatgtttcgtattct 481  Q
    ||||||||||| ||||||||||||||||||||| | |||||  ||| |||| ||||||| ||||    
T  54362319 ctctaaatattttgttttcaattttagtccctgcttttttactaaagttcacgtttcgtgttct 54362256  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 728
Target Start/End: Original strand, 48565073 - 48565130
Alignment:
Q  671 tcttatatctgattggatgtacgttgtttggtgataaaagcaacaaacacatcgagtt 728  Q
    ||||||||||  |||||||   |||||||||||||| ||||||||||| |||||||||    
T  48565073 tcttatatcttgttggatgcttgttgtttggtgatagaagcaacaaacgcatcgagtt 48565130  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 445
Target Start/End: Original strand, 37991720 - 37991811
Alignment:
Q  354 gtccttctaaatatactaactttcaattttcgtccttttgaaaattttcttcaatttttggtccctctaaatattatgttttcaattttagt 445  Q
    |||| |||||||||  ||| ||| | |||| |||||| | | ||||||||||| ||||| |||||| ||||| || ||||||||||||||||    
T  37991720 gtccctctaaatatgataattttaagttttagtccttctaagaattttcttcactttttagtccctttaaattttctgttttcaattttagt 37991811  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 16586053 - 16586139
Alignment:
Q  394 aaaattttcttcaatttttggtccctctaaatattatgttttcaattttagtccctgatattttataaaacttcatgtttcgtattc 480  Q
    |||| |||| |||||| ||||||| |||||||||| |  ||| |||||||||||||  |  ||||||||| |||||||||| |||||    
T  16586053 aaaaatttcatcaattattggtccttctaaatattctacttttaattttagtccctacttatttataaaagttcatgtttcatattc 16586139  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 15247382 - 15247333
Alignment:
Q  398 ttttcttcaatttttggtccctctaaatattatgttttcaattttagtcc 447  Q
    |||||| | ||||||  |||||||||||||| ||||||||||||||||||    
T  15247382 ttttctgcgattttttatccctctaaatattttgttttcaattttagtcc 15247333  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 626
Target Start/End: Complemental strand, 123564 - 123522
Alignment:
Q  584 ttattaatttaacggttaaatatgtttttggtccccataaaat 626  Q
    ||||| |||||| |||||||||||||||||||||| |||||||    
T  123564 ttatttatttaagggttaaatatgtttttggtccctataaaat 123522  T

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