View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_high_88 (Length: 305)
Name: NF8981_high_88
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_88 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 4948243 - 4947971
Alignment:
| Q |
18 |
attggagttgctatcatcatcattattattagtgaagataatagatctcttcacttggactgtggatccagcttttttgttgtcttcagcttgttcctcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4948243 |
attggagttgctatcatcatcattattattagtgaagataatagatctcttcacttggactgtggatccagcttttttgttgtcttcagcttgttcctcc |
4948144 |
T |
|
| Q |
118 |
agtgtctgcaaacgtgcctgtagttgtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4948143 |
agtgtctgcaaacgtgcctgtagttgtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacatta |
4948044 |
T |
|
| Q |
218 |
attcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctaggttaagcttgcatgt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4948043 |
attcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctaggttaagcttgcatgt |
4947971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University