View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_high_9 (Length: 791)
Name: NF8981_high_9
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 666; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 14 - 774
Target Start/End: Complemental strand, 30710585 - 30709825
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30710585 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgaga |
30710486 |
T |
|
| Q |
114 |
ggttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30710485 |
ggtaataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
30710386 |
T |
|
| Q |
214 |
tcaaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaagggtaaagcagggaaatttcaagaatcagcagagggatcatcaag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30710385 |
tcaaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaagggtaaagcagggaaatttcaagaatcagcagagggatcatcaag |
30710286 |
T |
|
| Q |
314 |
tgtgttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagcttaaccaacttctaataattaact |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30710285 |
tgtgttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagcttaaccaacttctaataattaact |
30710186 |
T |
|
| Q |
414 |
ttgtttgtaattttctttctgnnnnnnnnngttgcaatttttacgacattaattattcagctagggcatattgcaaatatgcttgctactttgaaattct |
513 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30710185 |
ttgtttgtaattttctttctgttttttgttgttggaatttttacgacattaattattcagctagggcatattgcaaatatgcttgctactttgaaattct |
30710086 |
T |
|
| Q |
514 |
agctgcannnnnnncctgttaattcactaggtctaaattgtcatctctgacaatttctccattcaaatactgaggttcagtttataatcagcttcagata |
613 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30710085 |
agctgcatttttttcctgttaattcactaggtctaaattgtcatctctgacaatttctccattcaaatactgaggttcagtttataatcagcttcagata |
30709986 |
T |
|
| Q |
614 |
acaatttaacaatctaaaaaggatacaggttacaatatttccataacagtacaagacgtgattctcatgttagatagtaat-tattagagtaaacctttc |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
30709985 |
acaatttaacaatctaaaaaggatacaggttacaatatttccataacagtacaagacgtgattctcatgttagatagtaatatatatgtgtaaacctttc |
30709886 |
T |
|
| Q |
713 |
tgatttaataaatagttcaaaattaagtttatatcgaactaaacatgttgcatgattaaatt |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30709885 |
tgatttaataaatagttcaaaattaagtttatatcgaact-aacatgttgcatgattaaatt |
30709825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 30689816 - 30689453
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30689816 |
cagagacacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgaga |
30689717 |
T |
|
| Q |
114 |
ggttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
213 |
Q |
| |
|
|||||| ||||| | |||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30689716 |
ggttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcac |
30689617 |
T |
|
| Q |
214 |
tcaaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaagggtaaagcagggaaatttcaagaatcagcagagggatcatcaag |
313 |
Q |
| |
|
| |||||||| ||||| | |||||||| | || | |||||| || |||| ||||||||||||| ||||| | |||| || |||||| |
|
|
| T |
30689616 |
taaaagagaggcactatgaacaaagaaa---gatgtta---tcaaaaggtgtaaagaataaagcagggaaa---caagatgaatcagaagg---atcaag |
30689529 |
T |
|
| Q |
314 |
tgtgttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc |
389 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
30689528 |
tgttttggtgttagaggatttgggagttgaatatcttgagcaacttctatccatatctgataatcaaagtacaagc |
30689453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 30698702 - 30698336
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30698702 |
cagagatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgaga |
30698603 |
T |
|
| Q |
114 |
ggttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcac |
213 |
Q |
| |
|
||| |||||||| | |||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30698602 |
ggtaataatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcac |
30698503 |
T |
|
| Q |
214 |
tcaaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaag---ggtaaagcagggaaatttcaagaatcagcagagggatcatc |
310 |
Q |
| |
|
| ||||| || ||||| | |||||||| || || | |||||| || |||| ||||||||||||| ||||| | ||||||| ||| |
|
|
| T |
30698502 |
taaaagaaaggcactatgaacaaagaaa---aatgtta---tcaaaagctacaaagaataataaagcagggaaa---caagatgaatcagaggg---atc |
30698415 |
T |
|
| Q |
311 |
aagtgtgttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc |
389 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| || || |||||||||||| ||||| |
|
|
| T |
30698414 |
aagtgttttggtgttagaggatttgggagttgaatatctcgagcaacttctaacaatatctgataatcaaagttcaagc |
30698336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 30718858 - 30718644
Alignment:
| Q |
15 |
agagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30718858 |
agagatacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30718759 |
T |
|
| Q |
115 |
gttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcact |
214 |
Q |
| |
|
||||| ||||| | |||||||||||| | |||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30718758 |
gttatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30718659 |
T |
|
| Q |
215 |
caaagagagacacta |
229 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
30718658 |
aaaagagaggcacta |
30718644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 30671920 - 30671555
Alignment:
| Q |
15 |
agagatacaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagag |
114 |
Q |
| |
|
||||| |||||||| || || | |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30671920 |
agagacacaacaaggggtggtaaaagggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagag |
30671821 |
T |
|
| Q |
115 |
gttataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcact |
214 |
Q |
| |
|
|| ||||||| | |||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30671820 |
gtaataatgccgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcact |
30671721 |
T |
|
| Q |
215 |
caaagagagacactacaaccaaagaaaattaaggtcatcgtcaaaaagtaaaaag---ggtaaagcagggaaatttcaagaatcagcagagggatcatca |
311 |
Q |
| |
|
||| |||||||||| | |||||||| || || | |||||| || |||| ||||||||||||| ||||| | ||||||| |||| |
|
|
| T |
30671720 |
caaggagagacactgtgaacaaagaaa---aatgtta---tcaaaagctacaaagaataataaagcagggaaa---caagatcaatcagaggg---atca |
30671633 |
T |
|
| Q |
312 |
agtgtgttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc |
389 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
30671632 |
agtgttttggtgttagaggatttgggagttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagc |
30671555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 30656753 - 30656394
Alignment:
| Q |
21 |
acaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggttata |
120 |
Q |
| |
|
|||||||| || || | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
30656753 |
acaacaaggggtggcaaaagggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
30656654 |
T |
|
| Q |
121 |
atgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcacctgcacttgcactcaaaga |
220 |
Q |
| |
|
||||| | |||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
30656653 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
30656554 |
T |
|
| Q |
221 |
gagacactacaaccaaagaaaattaaggtcatcgtcaaaaagt---aaaaagggtaaagcagggaaatttcaagaatcagcagagggatcatcaagtgtg |
317 |
Q |
| |
|
||| ||||| | |||||||| || || | |||||| || || || ||||||||||| | ||||| | |||| ||||| |||||| |
|
|
| T |
30656553 |
gaggcactatgaacaaagaaagtt---gtta---tcaaaaggtgtaaagaataataaagcagggaga---caagatgaatcagaaggatc---aagtgtt |
30656466 |
T |
|
| Q |
318 |
ttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||| |
|
|
| T |
30656465 |
ttggtgttagaggatttgggagttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagc |
30656394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 16252144 - 16252065
Alignment:
| Q |
38 |
aagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggtt |
117 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||| || || ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16252144 |
aagggtatggttaggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctttttcaatgagaggtt |
16252065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 33042601 - 33042679
Alignment:
| Q |
39 |
agggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggtt |
117 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||| ||||||||| |||||||||||||| || |||| |||||||||| |
|
|
| T |
33042601 |
agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggtt |
33042679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 15815181 - 15815216
Alignment:
| Q |
14 |
cagagatacaacaagaggaggaagaagggtttggct |
49 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15815181 |
cagagatacagcaagaggaggaagaagggtttggct |
15815216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 56539165 - 56539345
Alignment:
| Q |
21 |
acaacaagaggaggaagaagggtttggctaggaacatttaatagtgctgaagatgctgctttagcttatgatcaagctgcatttttaatgagaggttata |
120 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||| | |||||||| ||||||||||||||||| |||||||||||||||| | |||||||| ||| |
|
|
| T |
56539165 |
acaacaagaaaaggaagaagtgtttggcttggaacatttgacagtgctgaggatgctgctttagcttacgatcaagctgcattttcattgagaggtaata |
56539264 |
T |
|
| Q |
121 |
atgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcgagagattcaatatgattgcagaaaagggtcttcac |
201 |
Q |
| |
|
||| | | |||||||||||| | |||| ||||||| || ||||| |||||||||||||||||||||| ||| || ||||| |
|
|
| T |
56539265 |
atgttgtgctcaatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcagagaagagttttcac |
56539345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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