View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_10 (Length: 946)
Name: NF8981_low_10
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 311 - 902
Target Start/End: Complemental strand, 42183477 - 42182880
Alignment:
| Q |
311 |
gttaatgggctatgatattttctttgtctgtacatcaaaatatgaaattaaggaagaagagagaaaagggccatacatgaaagaagatgagaaggaacag |
410 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42183477 |
gttaatgggctatgttattttctttgtctgtacatcaaaatatgaaattaaggaagaagagagaaaagggccatacatgaaagaagatgagaaggaacag |
42183378 |
T |
|
| Q |
411 |
gaagtgaagccatcaagtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42183377 |
gaagtgaagccatcaagtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgc |
42183278 |
T |
|
| Q |
511 |
cattccacctgctgtgacaacaacaaacacaagtatgttcagacttcagaaacttgtacagaacnnnnnnngttctgatcactacttatttttctatata |
610 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
42183277 |
cattccacctgctgtgacaaccacaaacacaagtatgttcagacttcagaaacttgtacagaactttttttgttctgaccactacttatgtttctatata |
42183178 |
T |
|
| Q |
611 |
ttattgattgatggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggata |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42183177 |
ttattgattgatggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggata |
42183078 |
T |
|
| Q |
711 |
caccgccattatcaatgatagcattagcacctagagcagaagaatcacccccaaaagacatgttgtatgttgtgggaccataac------catcagcagc |
804 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42183077 |
caccaccattatcaatgatagcattagcacctagagcagaagaatcacccccaaaagacatgttgtatgttgtgggaccataaccatcagcatcagcagc |
42182978 |
T |
|
| Q |
805 |
agaagcagaagaagaatcatgattatgaaaaaatgaacggtggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttgg |
902 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42182977 |
agaagcagaagaagaatcatgattatgaaaaaatgaacggtggtgatgattattagagaaaccttcaaaactctgcaccgacccaacaacaatgttgg |
42182880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 42183792 - 42183606
Alignment:
| Q |
23 |
gggacgacctctatgcatatgcctttcacagtacctgttattaggagctacatctctagaacatctccattttttaccatctgttcttttgcacctacca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42183792 |
gggacgacctctatgcatatgcctttcacaatacctgttattaagagctacatctttagaacatctccattttttaccatctgttcttttgcacctacca |
42183693 |
T |
|
| Q |
123 |
gcctctggatcagtattgttcctatttgatagcctcagattgaaaccaccatccactgcttcaacaagttcaaatttcaagaaacag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42183692 |
gcctctggatcagtattgttcctatttgatagcctcaaattgaaaccaccatccactgcttcaacaagttcaaatttcaagaaacag |
42183606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 42183574 - 42183528
Alignment:
| Q |
213 |
gccacacattgattcaatgacaaaaggtaaatagaatgaaaagtggt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42183574 |
gccacacattgattcaatgacaaaaggtaaatagaatgaaaagtggt |
42183528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 11196831 - 11196783
Alignment:
| Q |
73 |
catctctagaacatctccattttttaccatctgttcttttgcacctacc |
121 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
11196831 |
catccctagcacatctccattttttaccatctgttcttctacacctacc |
11196783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University