View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_100 (Length: 463)
Name: NF8981_low_100
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 28796276 - 28796722
Alignment:
| Q |
1 |
tcaccaacagtgatttcacttaagaaagccatatatgagacatgggttggtggaaggggaattctaaacaagaaaggtcaagttgctagggaaagaggtt |
100 |
Q |
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| T |
28796276 |
tcaccaacagtgatttcacttaagaaagccatatatgagacatgggttggtggaaggggaattctaaacaagaaaggtcaagttgctagggaaagaggtt |
28796375 |
T |
|
| Q |
101 |
tgcaattgttcactgctaccaaaatggtggctgcttatgaaagactttttctttgcatatccagtttaaatcatgaggataatttttgtgaataccatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28796376 |
tgcaattgttcactgctaccaaaatggtggctgcttatgaaagactttttctttgcatatccagtttaaatcatgaggataatttttgtgaataccatcc |
28796475 |
T |
|
| Q |
201 |
attgagtaattaaacaagtttcaatttcaaaaagtagaggaaaaatgcagaagcttgttgtttaagtcatcagtgtattttgtaaatccttataactttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
28796476 |
attgagtaattaaacaagtttcaatttcaaaaagtagaggaaaaatgcagaagcttgttgtttaagccatcagtgtattttgtgaatccttataactttg |
28796575 |
T |
|
| Q |
301 |
tttgccaatctttgcactattttatgtaacattttcacatgatagcttgcaactatacttggtgtgttctcagaagcttgaaccttttgatatgtcatgt |
400 |
Q |
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| T |
28796576 |
tttgccaatctttgcactattttatgtaatattttcacatgatagcttgcaactatacttggtgtgttctcagaagcttgaaccttttgatatgtcatgt |
28796675 |
T |
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| Q |
401 |
aaccgaagtaaatagtaattaatattttcttaggtatccgtatcatg |
447 |
Q |
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| T |
28796676 |
aaccgaagtaaatagtaattaatattttcttaggtatccgtatcatg |
28796722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 28341189 - 28341133
Alignment:
| Q |
285 |
aatccttataactttgtttgccaatctttgcactattttatgtaacattttcacatg |
341 |
Q |
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|||| ||||| |||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
28341189 |
aatctttatagctttgtttgccaatctttgcaccatttcatgtaattttttcacatg |
28341133 |
T |
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