View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_103 (Length: 463)
Name: NF8981_low_103
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_103 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 35910391 - 35910837
Alignment:
| Q |
17 |
atcatacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910391 |
atcatacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcata |
35910490 |
T |
|
| Q |
117 |
actctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatct |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910491 |
actctctccagttatgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatct |
35910590 |
T |
|
| Q |
217 |
cctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910591 |
cctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatga |
35910690 |
T |
|
| Q |
317 |
tataagtttgtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcata |
416 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910691 |
tataagttggtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcata |
35910790 |
T |
|
| Q |
417 |
tgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910791 |
tgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
35910837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 35940169 - 35940614
Alignment:
| Q |
19 |
catacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940169 |
catacagaaatgcctttgaggttaataatggtgttcttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
35940268 |
T |
|
| Q |
119 |
tctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcc |
218 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
35940269 |
tctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggcagttgatttatctcc |
35940368 |
T |
|
| Q |
219 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940369 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatgata |
35940468 |
T |
|
| Q |
319 |
taagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940469 |
taagtttgtaagatattcatgtctcagaaatgcatcataaagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatat |
35940568 |
T |
|
| Q |
418 |
gggttacggtatagtgttttgccatcagagttgattctgaagggtc |
463 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
35940569 |
gggttacggtatagtgtttttccatcagagttgactctgaagggtc |
35940614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 35921200 - 35921635
Alignment:
| Q |
19 |
catacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35921200 |
catacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtaaagaatagtggatgcaagttgaggaacataatgaccggcataac |
35921299 |
T |
|
| Q |
119 |
tctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcc |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
35921300 |
tctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaagacataggcatctttagcagtggacttatctcc |
35921399 |
T |
|
| Q |
219 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgata |
318 |
Q |
| |
|
||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||| || |
|
|
| T |
35921400 |
tgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactgcatatttcataaggagt |
35921499 |
T |
|
| Q |
319 |
taagtttgtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatg |
418 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| |||| || |||||| |||||| | | |||||||||||||||||||||| |
|
|
| T |
35921500 |
taagtttctaagataatcatgtctcagaaatgcatcataaataacacattagttatatcgatgatca---------tctcaccttcattccaagcatatg |
35921590 |
T |
|
| Q |
419 |
ggttacggtatagtgttttgccatcagagttgattctgaagggtc |
463 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35921591 |
ggttacggtataatgttttgccatcagagttgactctgaagggtc |
35921635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 35914828 - 35915264
Alignment:
| Q |
19 |
catacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
118 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||||| |
|
|
| T |
35914828 |
catacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtcgatgcaagctgcggaacatagtgaccagcataac |
35914927 |
T |
|
| Q |
119 |
tctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcc |
218 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| || || ||||||||||| |
|
|
| T |
35914928 |
tctctccagttatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgatgaggaaaacataggcatctttagcggtggacttatctcc |
35915027 |
T |
|
| Q |
219 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgata |
318 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || |||||||||||||||| |||| |
|
|
| T |
35915028 |
tgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcatatttcataaggata |
35915127 |
T |
|
| Q |
319 |
taagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatat |
417 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||| |||||| || || |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
35915128 |
taagttggtaagataatcatgtctcaggcatgcatcataaagaaataaattagttatat---------tgatgattgtctcaccttcattccaagcatat |
35915218 |
T |
|
| Q |
418 |
gggttacggtatagtgttttgccatcagagttgattctgaagggtc |
463 |
Q |
| |
|
||||| ||||||| |||||| |||||||| |||| ||||||||||| |
|
|
| T |
35915219 |
gggttgcggtataatgtttttccatcagaattgactctgaagggtc |
35915264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 35927793 - 35928229
Alignment:
| Q |
19 |
catacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
118 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35927793 |
catacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacataatgaccagcataac |
35927892 |
T |
|
| Q |
119 |
tctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcc |
218 |
Q |
| |
|
||||||||| || ||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||| || | || ||||||||||| |||||||| |
|
|
| T |
35927893 |
tctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggcagttgatttatctcc |
35927992 |
T |
|
| Q |
219 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgata |
318 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
35927993 |
tgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgata |
35928092 |
T |
|
| Q |
319 |
taagtttgtaagatattcatgtctcagaa---atgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcat |
415 |
Q |
| |
|
| | ||||| ||||||||||| |||| ||||||||||||||||||| | ||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
35928093 |
aac--tggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctat---------cgatgattgtttcaccttcagtccaagcat |
35928181 |
T |
|
| Q |
416 |
atgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
463 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928182 |
attggttacggtatagtgttttgccatcagagttgattctgaagggtc |
35928229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 35934606 - 35935045
Alignment:
| Q |
19 |
catacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacataatgaccagcataac |
118 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934606 |
catacagatatgcctttgaggttaatgatggttttgttatagagtttatggtggtgaagaatagtggatgcaagttgaggaacataatgaccagcataac |
35934705 |
T |
|
| Q |
119 |
tctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcagttgacttatctcc |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
35934706 |
tctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaaaacataggcatctttagcagtggacttatctcc |
35934805 |
T |
|
| Q |
219 |
tgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgc--atatttcataatga |
316 |
Q |
| |
|
|| ||| | ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || || ||||| |||||| |||||| |
|
|
| T |
35934806 |
tgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatatattttataatg- |
35934904 |
T |
|
| Q |
317 |
tataagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcat |
415 |
Q |
| |
|
|||| || || |||| |||||||||| |||||||| || ||||| || |||| |||| ||| |||||||| ||||||| ||||||||| |
|
|
| T |
35934905 |
-ataaattggttagatgttcatgtctcttaaatgcataatggagaaaacatttaatcatat------cgattatgattgtcataccttcactccaagcat |
35934997 |
T |
|
| Q |
416 |
atgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
463 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
35934998 |
attggttacggtataatgtttttccatcagagttgactctgaagggtc |
35935045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 11084471 - 11084551
Alignment:
| Q |
87 |
tgcaagttgaggaacataatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctc |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||| | || |||| ||||||||||| |
|
|
| T |
11084471 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctc |
11084551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 316145 - 316183
Alignment:
| Q |
89 |
caagttgaggaacataatgaccagcataactctctccag |
127 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
316145 |
caagttgaggaacataatgtccagcataactttctccag |
316183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 6215695 - 6215780
Alignment:
| Q |
91 |
agttgaggaacataatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagtt |
176 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || ||||||| | | ||||||| | || || |||||||||||||| |||||||| |
|
|
| T |
6215695 |
agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctcaagccagtt |
6215780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 6208979 - 6209023
Alignment:
| Q |
242 |
tgtttgagtaggaaaatcctactcctgctggagattctaagaaga |
286 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaaga |
6209023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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