View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_107 (Length: 454)
Name: NF8981_low_107
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_107 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Original strand, 44313840 - 44314255
Alignment:
| Q |
20 |
atcacaaactgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgcctgaatcatggaacga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44313840 |
atcacaaactgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgtctgaatcatggaacga |
44313939 |
T |
|
| Q |
120 |
ttacaagaaccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagaggataccaaccgaaaggagagcagggct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44313940 |
ttacaagaaccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagagaataccaaccgaaaggagagcagggct |
44314039 |
T |
|
| Q |
220 |
accaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314040 |
gccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcact |
44314139 |
T |
|
| Q |
320 |
ataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgttatgtatgtggtaagataggtcactatgcacctca |
419 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44314140 |
ataaaaataatcatgttcctcgtgttactaatcccactttcacaaatggaaatggaggacattgttatgtatgtggtaagataggtcactatgcacctca |
44314239 |
T |
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| Q |
420 |
gtgcagacaccgaaag |
435 |
Q |
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|||||||||||||||| |
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| T |
44314240 |
gtgcagacaccgaaag |
44314255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 34099052 - 34098637
Alignment:
| Q |
20 |
atcacaaactgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgcctgaatcatggaacga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34099052 |
atcacaaactgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgtctgaatcatggaacga |
34098953 |
T |
|
| Q |
120 |
ttacaagaaccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagaggataccaaccgaaaggagagcagggct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34098952 |
ttacaagaaccagctgaagcacaagcagaagcagttgccgttggcagatcttattacacacatcatcatagagaataccaaccgaaaggagagcagggct |
34098853 |
T |
|
| Q |
220 |
accaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098852 |
gccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggtatgataacaaacctaatcgtaaatctggtcact |
34098753 |
T |
|
| Q |
320 |
ataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgttatgtatgtggtaagataggtcactatgcacctca |
419 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34098752 |
ataaaaataatcatgttcctcgtgttactaatcccactttcacaaatggaaatggaggacattgttatgtatgtggtaagataggtcactatgcacctca |
34098653 |
T |
|
| Q |
420 |
gtgcagacaccgaaag |
435 |
Q |
| |
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|||||||||||||||| |
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| T |
34098652 |
gtgcagacaccgaaag |
34098637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 187 - 435
Target Start/End: Complemental strand, 40565 - 40317
Alignment:
| Q |
187 |
atagaggataccaaccgaaaggagagcagggctaccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggt |
286 |
Q |
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|||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
40565 |
atagaggataccaacctaaaggagagcagggctgccaaagccagggctttagcttcccaagcaaatctgatccaaaacaacactaattagaaaaagaggt |
40466 |
T |
|
| Q |
287 |
atgataacaaacctaatcgtaaatctggtcacaataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgtta |
386 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
40465 |
atgataacaaacctaatcataaacctggtcacaataaaaataatcatgttcctcgtgttactaatccctctttcgaaaatggaaatggaggacactgtta |
40366 |
T |
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| Q |
387 |
tgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaag |
435 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40365 |
tgtatgtggtaagaaaggtcactatgcacctcagtgcagacaccgaaag |
40317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 40691 - 40568
Alignment:
| Q |
20 |
atcacaaactgattgaagaattaaaggctgaaaatattcctctcccagacgagttcattgctggaattctcattgaaaaattgcctgaatcatggaacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
40691 |
atcacaaactgattgaagaattaaaggctgaagatattc---tcccagacgatttcattgatggaattctcattgaaaaattgtcggaatcatggaacga |
40595 |
T |
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| Q |
120 |
ttacaagaaccagctgaagcacaagca |
146 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
40594 |
ttacaagaaccagttgaagcacaagca |
40568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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