View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_116 (Length: 444)
Name: NF8981_low_116
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_116 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 113 - 428
Target Start/End: Complemental strand, 35541846 - 35541530
Alignment:
| Q |
113 |
aatgagtactgagtaggtttcacctgagtatatgtctatgtcatcaactgcaaatgggtgcacgtagtttccatcagcttctactacaagtagtttgtga |
212 |
Q |
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| T |
35541846 |
aatgagtactgagtaggtttcacctgagtatatgtctatgtcatcaactgcaaatgggtgcacgtagtttccatcagcttctactacaagtagtttgtga |
35541747 |
T |
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| Q |
213 |
ttctacgacatagacaaaatatgggggcaatgttagttgatgaaagaatgatctgatcgatggtgaatttcatgatgaaactacttaaataatgatgaga |
312 |
Q |
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| T |
35541746 |
ttctacgacatagacaaaatatgggggcaatgttagttgatgaaagaatgatctgatctatggtgaaattcatgatgaaactacttaaataatgatgaga |
35541647 |
T |
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| Q |
313 |
gttgatcttctacatgaaannnnnnnncgcaagactactaaagctgtctttg--nnnnnnnnntggataaccgataaactagtttttgactgattattaa |
410 |
Q |
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| T |
35541646 |
gtggatcttctacatgaaa-tttttttcacaagactactaaagctgtctttgaaaaaaaaaagtggataaccgataaactagtttttgactgattattaa |
35541548 |
T |
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| Q |
411 |
ttaagtttgtctatttct |
428 |
Q |
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|||||||||||||||||| |
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| T |
35541547 |
ttaagtttgtctatttct |
35541530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35541958 - 35541874
Alignment:
| Q |
1 |
atgcagagattgttttgtagttaaggattgttagggcttgtggtgtgttaggttttctacctctaacaccgattgcaatccagta |
85 |
Q |
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| T |
35541958 |
atgcagagattgttttgtagttaaggattgttagggcttgtggtgtgttaggttttctacctctaacaccgattgcaatccagta |
35541874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 295
Target Start/End: Complemental strand, 35509213 - 35509039
Alignment:
| Q |
120 |
actgagtaggtttcacctgagtatatgtctatgtcatcaactgcaaatgggtgcacgtagtttccatcagcttctactacaagtagtttgtgattctacg |
219 |
Q |
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| T |
35509213 |
actgagtaggtttcacctgagtagatgtcgatgtcatcgactgcgaatgggtgcacatagtttccatctgcttccactacaataagtttgtgattctgaa |
35509114 |
T |
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| Q |
220 |
acatagacaaaatatgggggcaatgttagttgatgaaagaatgatctgatcgatggtgaatttcatgatgaaacta |
295 |
Q |
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| T |
35509113 |
acaaacagaaattat-ggggcaatgttatttcatgaaataatgaattaatctatggtgcaattcatgatgaaacta |
35509039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 35509330 - 35509248
Alignment:
| Q |
3 |
gcagagattgttttgtagttaaggattgttagggcttgtggtgtgttaggttttctacctctaacaccgattgcaatccagta |
85 |
Q |
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| T |
35509330 |
gcagagagtggtttgtagttaaggattgttagggcttgtggtgtgcttggttttctacctctaactccgattgaaagccagta |
35509248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 35527414 - 35527312
Alignment:
| Q |
116 |
gagtactgagtaggtttcacctgagtatatgtctatgtcatcaactgcaaatgggtgcacgtagtttccatcagcttctactacaagtagtttgtgattc |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||||||||||||| ||||| || |||| ||| |||||||| |
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| T |
35527414 |
gagtactgagtaggtttcacctgagtagatgtctatgctatcaaccgtgaatgggtgcacgtagtttccatctgcttccaccacaacaagtgtgtgattc |
35527315 |
T |
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| Q |
216 |
tac |
218 |
Q |
| |
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||| |
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| T |
35527314 |
tac |
35527312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 35527512 - 35527482
Alignment:
| Q |
18 |
tagttaaggattgttagggcttgtggtgtgt |
48 |
Q |
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| T |
35527512 |
tagttaaggattgttagggcttgtggtgtgt |
35527482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 35541997 - 35541959
Alignment:
| Q |
37 |
cttgtggtgtgttaggttttctacctctaacaccgattg |
75 |
Q |
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| T |
35541997 |
cttgtggcgtgtttggttttctacctctaacaccgattg |
35541959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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