View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_117 (Length: 443)
Name: NF8981_low_117
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 191 - 434
Target Start/End: Original strand, 33251205 - 33251448
Alignment:
| Q |
191 |
atacctgaataagcttcttgaatgttctgaaatttacacttggcttcgctaagtaaagaaggtgttcttgtccacctatctggatgccattgctgcatgc |
290 |
Q |
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| T |
33251205 |
atacctgaataagcttcttgaatgttctgaaatttacacttggcttcgctaagtaaagaaggtgttcttgtccacctatctggatgccattgctgcatgc |
33251304 |
T |
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| Q |
291 |
attgaaattcacaatcagcacctcacattcaaatttgaataacaatgcaaattcccaaaaagaaagcaactataattaactaaccatagcaagcttccta |
390 |
Q |
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| T |
33251305 |
attgaaattcacaatcagcacctcacattcaaatttgaataacaatgcaaattcccaaaaagaaagcaactataattaactaaccatagcaagcttccta |
33251404 |
T |
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| Q |
391 |
taagcacgccttatttcatctaaagaagaatctgagctaacacc |
434 |
Q |
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| T |
33251405 |
taagcacgccttatttcatctatagaagaatctgagctaacacc |
33251448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 33251019 - 33251103
Alignment:
| Q |
16 |
ataattacctcaacttcttcctcttgaggatcatacaagccagcatcgtacatacttcttttcttgggatcagatagcactgctc |
100 |
Q |
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| T |
33251019 |
ataattacctcaacttcttcctcttgaggatcatacaagccagcatcgtacatacttcttttcttgggatcagatagcactgctc |
33251103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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