View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_119 (Length: 441)

Name: NF8981_low_119
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_119
NF8981_low_119
[»] chr1 (6 HSPs)
chr1 (10-426)||(14789470-14789886)
chr1 (43-369)||(14757091-14757417)
chr1 (36-418)||(14879939-14880321)
chr1 (61-426)||(14874678-14875043)
chr1 (48-426)||(14769459-14769837)
chr1 (163-239)||(36307158-36307234)
[»] chr8 (1 HSPs)
chr8 (119-426)||(14857388-14857695)
[»] scaffold0042 (1 HSPs)
scaffold0042 (63-372)||(91636-91945)
[»] chr4 (1 HSPs)
chr4 (286-369)||(35368773-35368856)
[»] chr7 (5 HSPs)
chr7 (135-233)||(47240829-47240927)
chr7 (135-233)||(47296266-47296364)
chr7 (135-205)||(47255809-47255879)
chr7 (135-205)||(47300858-47300928)
chr7 (135-205)||(47282162-47282232)
[»] chr5 (1 HSPs)
chr5 (135-205)||(32729522-32729592)
[»] chr3 (1 HSPs)
chr3 (286-336)||(33003102-33003152)


Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Original strand, 14789470 - 14789886
Alignment:
Q  10 cagagaattcaaattcctccaataagatatctagtgtgagaagatcaatattatacctgaataagcagcaatggagtgttaagcacaactgaagaaccag 109  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789470 cagagaattcaaattcctccaataacatatctagtatgagaagatcaatattatacctgaataagcagcaatggagtgttaagcacaactgaagaaccag 14789569  T
Q  110 gaacatcataaagaagctcatctatgcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789570 gaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatcttcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaat 14789669  T
Q  210 accttcatcattacaatcaaccataagtttcctactaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgctttt 309  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789670 accttcatcattacaatccaccataagtttcctacttggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgctttt 14789769  T
Q  310 ctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14789770 ctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatat 14789869  T
Q  410 ctgaaagtaattttatt 426  Q
    |||||||||||||||||    
T  14789870 ctgaaagtaattttatt 14789886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 43 - 369
Target Start/End: Complemental strand, 14757417 - 14757091
Alignment:
Q  43 gtgtgagaagatcaatattatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaa 142  Q
    |||||||||||| | |  |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  14757417 gtgtgagaagattattgctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaa 14757318  T
Q  143 atggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcct 242  Q
    |||||||||||| | | |||||||||| ||  | | ||||||| |||||||||||||||||||||| ||||||  || | ||||| ||||||||||||||    
T  14757317 atggaggatgaagatcttcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcct 14757218  T
Q  243 actaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccata 342  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14757217 acccggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccata 14757118  T
Q  343 tttggatcatacttgtaaaattgtatc 369  Q
    ||||||||||| || ||||||||||||    
T  14757117 tttggatcatatttataaaattgtatc 14757091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 36 - 418
Target Start/End: Original strand, 14879939 - 14880321
Alignment:
Q  36 atatctagtgtgagaagatcaatattatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatg 135  Q
    |||| ||| |||| |||||||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||| | |    
T  14879939 atatgtagggtgaaaagatcaatactatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaag 14880038  T
Q  136 caaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataa 235  Q
    ||||||||||||||||||| |||||||||||| | || |||||||||||| |||||||||||||||||||||| ||||||  || | ||||| |||||||    
T  14880039 caaggaaatggaggatgaagagcatcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataa 14880138  T
Q  236 gtttcctactaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccc 335  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  14880139 gtttcctaccaggaccttcccttaatctacctgcaaatggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatctttccc 14880238  T
Q  336 tgccatatttggatcatacttgtaaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagta 418  Q
    |||||||||||||||||  || || |||||||||||| ||  |||  ||||||||   ||||||||||| || ||||| ||||    
T  14880239 tgccatatttggatcatggttatagaattgtatcaaaggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagta 14880321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 61 - 426
Target Start/End: Original strand, 14874678 - 14875043
Alignment:
Q  61 tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaacagcat 160  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |  ||| ||||||||||||||| || ||    
T  14874678 tatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaagaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtat 14874777  T
Q  161 caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttcccttaa 260  Q
    |||| || | || ||  |||||||| |||||||||||||||||||||| ||||||  || | ||||| |||||||||||||||| |||||||||||||||    
T  14874778 cacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa 14874877  T
Q  261 tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaa 360  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||  |||| |||| ||||||    
T  14874878 cctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggaacatagttgtaa 14874977  T
Q  361 aattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatt 426  Q
    |||||||||| | |  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14874978 aattgtatcacaggcatttgataacgtaacccttcttggtcatctatatctgaaagtaattttatt 14875043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 48 - 426
Target Start/End: Original strand, 14769459 - 14769837
Alignment:
Q  48 agaagatcaatattatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatgga 147  Q
    ||||| ||||||  |||||||||| | || |||||||  |||||||||  |||||||||||||||||||| ||||||||||||| |  |||||||| |||    
T  14769459 agaagttcaatacaatacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaagga 14769558  T
Q  148 ggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactag 247  Q
    || |||| |||||||||||||| ||  | | ||||||| |||||||||||||||||||||| ||||||  || | ||||| |||||||||||||||| ||    
T  14769559 ggttgaagagcatcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccag 14769658  T
Q  248 gaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttgg 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  14769659 gaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatctttacctgccatatttgg 14769758  T
Q  348 atcatacttgtaaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatt 426  Q
    |||||| || |||||||||||||   || ||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  14769759 atcatatttataaaattgtatcactggaatttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatt 14769837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 36307234 - 36307158
Alignment:
Q  163 ccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagttt 239  Q
    |||||||||||||| || ||||||||||| || ||||| |||| || ||||||  |||||||||| ||||| |||||    
T  36307234 ccaaattgttcaagtgttacatcagcatctgcctcaatgaacataacaccttctccattacaatccaccatgagttt 36307158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 119 - 426
Target Start/End: Complemental strand, 14857695 - 14857388
Alignment:
Q  119 aaagaagctcatctatgcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatc 218  Q
    ||||||||||||| |  |||||||| ||||| |||| |||||||||||||| ||  | | ||||||||||||||||||||||||||||||||||||||||    
T  14857695 aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc 14857596  T
Q  219 attacaatcaaccataagtttcctactaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata 318  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14857595 attacaatctaccataagcttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata 14857496  T
Q  319 tcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagta 418  Q
    ||||||||||||||||||||||||||||||||||| || |||||||| |||    || ||||| ||||||| ||||||||||||||||| ||||||||||    
T  14857495 tcaacagggtctttccctgccatatttggatcatatttataaaattggatcgctggaatttgaaaacgtaacccttcttggtcatctatgtctgaaagta 14857396  T
Q  419 attttatt 426  Q
    ||||||||    
T  14857395 attttatt 14857388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 63 - 372
Target Start/End: Original strand, 91636 - 91945
Alignment:
Q  63 tacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaacagcatca 162  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||||  ||||||    
T  91636 tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca 91735  T
Q  163 ccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttcccttaatc 262  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||  || |||||||||||||||||||||| |  ||||||||||| || |    
T  91736 ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccctcaacc 91835  T
Q  263 tacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaa 362  Q
    ||||||| |||||||||||||||||||| ||||| || |  ||||||||||||| | ||||||||||||| ||| ||||| |||||| ||| ||||||||    
T  91836 tacctgccaatggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtctttgccttccataattggattatagttgtaaaa 91935  T
Q  363 ttgtatcaaa 372  Q
    ||||||||||    
T  91936 ttgtatcaaa 91945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 35368856 - 35368773
Alignment:
Q  286 acaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatc 369  Q
    |||||||||||||| | |||||||||||||| ||||||| ||||||||||| ||||| |||||||||| || ||||||||||||    
T  35368856 acaagtgtttttgcaattgcttttctaataacatcaacaaggtctttcccttccataattggatcataattataaaattgtatc 35368773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 47240927 - 47240829
Alignment:
Q  135 gcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccat 233  Q
    |||||| ||||||||||| | ||||||||||||||| ||||| || |||||||| ||||||||||| ||||  | ||||||| || ||||||| |||||    
T  47240927 gcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat 47240829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 47296266 - 47296364
Alignment:
Q  135 gcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccat 233  Q
    |||||| ||||||||||| |  |||||||||||||| ||||| || |||||||| ||||||||||| ||||  | ||||||| || ||||||| |||||    
T  47296266 gcaagggaatggaggatgcagggcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat 47296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 47255879 - 47255809
Alignment:
Q  135 gcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaaca 205  Q
    ||||||||||||||| || | ||||||||||||||| ||||| || | |||||| ||||||||||| ||||    
T  47255879 gcaaggaaatggaggttgcagagcatcaccaaattgatcaagtgttatatcagcttcagcttcaatgaaca 47255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 47300858 - 47300928
Alignment:
Q  135 gcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaaca 205  Q
    |||||| ||||||||||| |  |||||||||||||| ||||| || |||||||| ||||||||||| ||||    
T  47300858 gcaagggaatggaggatgcagggcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaaca 47300928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 47282232 - 47282162
Alignment:
Q  135 gcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaaca 205  Q
    |||||| ||||| ||||||| ||||||||||||||  | ||| || |||||||| ||||||||||| ||||    
T  47282232 gcaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaaca 47282162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 32729592 - 32729522
Alignment:
Q  135 gcaaggaaatggaggatgaacagcatcaccaaattgttcaagagtaacatcagcatcagcttcaataaaca 205  Q
    |||||| ||||||||||| | ||||||||||||||| ||||| || |||||||| ||||||||||| ||||    
T  32729592 gcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaaca 32729522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 33003102 - 33003152
Alignment:
Q  286 acaagtgtttttgctaatgcttttctaataatatcaacagggtctttccct 336  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  33003102 acaagtgtttttgcaattgcttttctaataacatcaacagggtctttccct 33003152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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