View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_125 (Length: 433)
Name: NF8981_low_125
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 31322047 - 31321646
Alignment:
| Q |
13 |
tggtgttcagaagtaggagaaggaaggagcaaaaacacttgcttttgattggttttattttatcaacctctgtacatagtatatcttcttggacatcggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31322047 |
tggtgttcagaagtaggagaaggaaggagcaaaaacacttgcttttgattggttttattttatcaacccctgtacatagtatatcttcttggacatcggt |
31321948 |
T |
|
| Q |
113 |
tgatgttgttagaagctcgtcctctttttctcagccagcttgaattcatttattgctagaaattttctttacttcattcatacattgacgttttaacgag |
212 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |
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| T |
31321947 |
tgatgttgctagaagctcgtcctctttttctcagccagcttgaattcatttattgccagaaattttctttacttcattcatacatt---gtttcaacgag |
31321851 |
T |
|
| Q |
213 |
tagttagtgcaattcaattgtattaatacatcaatattac-tttatgttcttaattttatagtcaagatttcatatatacatttgaagtccatttctgct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321850 |
tagttagtgcaattcaattgtattaatacatcaatattacttttatgttcttaattttatagtcaagatttcatatatacatttgaagtccatttctgct |
31321751 |
T |
|
| Q |
312 |
tcattattcattctttatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaattcattctcaagtccttgagct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31321750 |
tcattattcattctttatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaattcattctcaagtccttgtact |
31321651 |
T |
|
| Q |
412 |
atctg |
416 |
Q |
| |
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||||| |
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| T |
31321650 |
atctg |
31321646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 230 - 391
Target Start/End: Complemental strand, 37498026 - 37497863
Alignment:
| Q |
230 |
ttgtattaatacatcaatattactttatgttcttaattttatagtcaagatttc-atatatacatttgaagtccatttctgcttcattatt-cattcttt |
327 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| | || ||||| |||||| |||||||| |
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| T |
37498026 |
ttgtattaatacaccaatattactttctgttcttaattttatagtcaagatttctagatatacatttgaagataaattttgcttgattatttcattcttt |
37497927 |
T |
|
| Q |
328 |
atatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaatt |
391 |
Q |
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| T |
37497926 |
ttgtattcattttcaagtttttgtactatttatatttgaaggtgaaatgaaattctttataatt |
37497863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 395
Target Start/End: Complemental strand, 37497842 - 37497795
Alignment:
| Q |
348 |
ttgtactatttgtatttgaaggtgaaatgaaattctttacaattcatt |
395 |
Q |
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||||||||||| || ||||||||||||||||||||| ||| ||||||| |
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| T |
37497842 |
ttgtactatttatagttgaaggtgaaatgaaattctctactattcatt |
37497795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 407
Target Start/End: Complemental strand, 42601880 - 42601687
Alignment:
| Q |
212 |
gtagttagtgcaattcaattgtattaatacatcaatattactttatgttcttaattttatagtcaag-----atttc-atatatacatttgaagtccatt |
305 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||| ||||| | |||||||||||||||| | | |
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| T |
42601880 |
gtagttagtgcaatttatttgtattaatacatcaatatt---ttctgttcttaattttatagtcaagtcaagatttccagatatacatttgaagtcaaat |
42601784 |
T |
|
| Q |
306 |
tctgcttcatta-ttcattctttatatatttattttcaagttattgtactatttgtatttgaaggtgaaatgaaattctttacaattcattctcaagtcc |
404 |
Q |
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||||||||| || |||||| ||||| |||| ||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
42601783 |
tctgcttcactatttcattttttatgtattcattatcaagtcgttgtac------tatttgaaggtgaaatgaaattcattacaattcattctaaagtcc |
42601690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 42602183 - 42602016
Alignment:
| Q |
15 |
gtgttcagaagtaggagaaggaaggagcaaaaacacttgcttttgattggttttattttatcaacctctgtacatagtatatcttcttggacatcggttg |
114 |
Q |
| |
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||||||||||| ||||| |||||||||||| | ||||| |||| | |||| || || |||||||| |||| ||||| ||||||||||| || ||| |
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| T |
42602183 |
gtgttcagaagcaggagcaggaaggagcaacagcacttactttgggttggcttgat-----caacctctctacacagtat--cttcttggacaccgattg |
42602091 |
T |
|
| Q |
115 |
atgttgttagaagctcgtcctctttttctcagccagcttgaattcatttattgctagaaattttctttacttcat |
189 |
Q |
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| |||| | ||||||| ||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| |
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| T |
42602090 |
acgttgctggaagctcatcctctttttctcagccagcttgaattcattcattgccacagattttctttacttcat |
42602016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 42601682 - 42601650
Alignment:
| Q |
363 |
ttgaaggtgaaatgaaattctttacaattcatt |
395 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
42601682 |
ttgaaggtgaaatgaaattctttgcaattcatt |
42601650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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