View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_126 (Length: 433)
Name: NF8981_low_126
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_126 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 8572979 - 8572559
Alignment:
| Q |
1 |
ttagtgtttacctctttgccatcactacaactattattgttgctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccact |
100 |
Q |
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| T |
8572979 |
ttagtgtttacctctttgccatcactacaactattattgttgctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccact |
8572880 |
T |
|
| Q |
101 |
tggtgttcgccaacaggtatatttatattctcactttcatccttataccttatcggatctgagtcattgtgattaatttgtgacacacatgcagggaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8572879 |
tggtgttcgccaacaggtatatttatattctcactttcatccttataccttatcggatctgagtcattgtgattaatttgtgacacacatgcagggaata |
8572780 |
T |
|
| Q |
201 |
cttatcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8572779 |
cttatcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcattt |
8572680 |
T |
|
| Q |
301 |
catggctagtacttttcacatttcctatataatttctataccatatgatatgtataaataacaaaaagaattaaacacgaaagcatgttatgttattaga |
400 |
Q |
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| T |
8572679 |
catggttagtacctttcacatttcctatataatttctataccatatgatatgtataaataacaaaaagaattaaacacgaaagcatgttatgttattata |
8572580 |
T |
|
| Q |
401 |
gttggtctcttttaatgatgt |
421 |
Q |
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| T |
8572579 |
gttggtttcttttaatgatgt |
8572559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 53755855 - 53755754
Alignment:
| Q |
204 |
atcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcat |
303 |
Q |
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||||||||||||||||| || ||||||||||||||||| ||||| || || ||||||||||||||||||||||| ||| ||||||| |||||||| |||| |
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| T |
53755855 |
atcaatggccaattccctggtccagacattcattctgttacaaacgacaacctcattatcaatgtcttcaacagtttgaatgaaccctttctcatctcat |
53755756 |
T |
|
| Q |
304 |
gg |
305 |
Q |
| |
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|| |
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| T |
53755755 |
gg |
53755754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 53756069 - 53756002
Alignment:
| Q |
42 |
gctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccacttggtgttcg |
109 |
Q |
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| T |
53756069 |
gctgaagatccctataaattcttcaactggaatgttacttacggtgacatttacccacttggagttcg |
53756002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 17138946 - 17138885
Alignment:
| Q |
240 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttc |
301 |
Q |
| |
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||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
17138946 |
gtgactaatgataatttgattatcaatgttttcaacagcttggatgaacctttcctcatttc |
17138885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 17345571 - 17345641
Alignment:
| Q |
240 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggctagt |
310 |
Q |
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| T |
17345571 |
gtgactaatgataatttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt |
17345641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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