View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_13 (Length: 890)
Name: NF8981_low_13
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_13 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 794; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 18 - 879
Target Start/End: Complemental strand, 6069777 - 6068916
Alignment:
| Q |
18 |
gatggaagcaacatgaagaggttgcctgaaagcattaaaaatcttgaagaattggaaattttgtctttggtgaattgcagggagcttgagtgcataccag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069777 |
gatggaagcaacatgaagaggttgcctgaaagcattaaaaagcttgaagaattggaaattttgtctttggtgaattgcagggagcttgagtgcataccag |
6069678 |
T |
|
| Q |
118 |
agcttccacctctcatcacagtgttaaatgcagttaactgcacgtcactcatttcagtgtcaagtctaaaaaatttagcaacaaagatgatgggaaaaac |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6069677 |
agcttccacctctcatcacaatgttaaatgcagtaaactgcacatcactaatttcagtgtcaaatctaaaaaaattagcaacaaagatgatgggaaaaac |
6069578 |
T |
|
| Q |
218 |
caaacacatttcattcagtaacagcttgaatttggatggacattcacttagccttataatgaaaagtctcaatttaacaatgatgagtgctgtgtttcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069577 |
caaacacatttcattcagtaacagcttgaatttggatggacattcacttacccttataatgaaaagtctcaatttaacaatgatgagtgctgtgtttcaa |
6069478 |
T |
|
| Q |
318 |
aatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatcccgagtctgttgcaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069477 |
aatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatcccgagtctgttgcaat |
6069378 |
T |
|
| Q |
418 |
gtcaaatagctactgactcctccattacctttaatttgcttcctgatcgttccaacctgctaggattcatatactcggtggttctttctccagctggtgg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6069377 |
gtcaaatagctactgactcctccattacctttaatttgcttcctgatcattccaacctgctaggattcatatactcagtggttctttctccagctggtgg |
6069278 |
T |
|
| Q |
518 |
agatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggctaaatactgattgcacagaactg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6069277 |
agatggaacgaagaagggtgaagctagaataaaatgtcaatgcaacttgggagaacaaggtataaaggttagcttgctaaatactgattgcacagaactg |
6069178 |
T |
|
| Q |
618 |
aactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacg |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069177 |
aactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacg |
6069078 |
T |
|
| Q |
718 |
atatgggggaagttgatggttcaattggtattaaagagtgcggggtacgacttgtaggtgttgaagaattggagagtgttttaccggaattggaattgga |
817 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
6069077 |
atatgggggaagttgacggttcaattggtattaaagagtgcggggtacgacttgtaggtgtcgaagacttggagagtgttttactggaattggaattgga |
6068978 |
T |
|
| Q |
818 |
ttcacaaaggaaagaagagttgaagaaggcagttgaattagaatcaggacatagtataatct |
879 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6068977 |
ttcaccaaggaaagaagagttgaagaaggcagttgaattagaatcaggacatagtataatct |
6068916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 876
Target Start/End: Complemental strand, 6194163 - 6193308
Alignment:
| Q |
18 |
gatggaagcaacatgaagaggttgcctgaaagcattaaaaatcttgaagaattggaaattttgtctttggtgaattgcagggagcttgagtgcataccag |
117 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6194163 |
gatggaagcaacatgaaaatgttgcctcaaagcattaagaaacttgaagaactggaaattttgtctttggtgaattgcaggaagcttgagtgcataccag |
6194064 |
T |
|
| Q |
118 |
agcttccacctctcatcacagtgttaaatgcagttaactgcacgtcactcatttcagtgtcaagtctaaaaaatttagcaacaaagatgatgggaaaaac |
217 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| || || |||||||||||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6194063 |
agcttccacctctaatcacactgttaaatgcagttaactgcacatcgctggtttcagtgtcaaatctaaaaaaattagcaacaaagatgatcggaaaaac |
6193964 |
T |
|
| Q |
218 |
caaacacatttcattcagtaacagcttgaatttggatggacattcacttagccttataatgaaaagtctcaatttaacaatgatgagtgctgtgtttcaa |
317 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6193963 |
caaacatatttcattcagcaacagcttgaatttggacggacattcacttggacttataatggaaagtctcaatttaacaatgatgagtgctgtgtttcat |
6193864 |
T |
|
| Q |
318 |
aatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatcccgagtctgttgcaat |
417 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||| |||| |||||||||| ||||| ||| ||||||| |||||||||| || || |||| |
|
|
| T |
6193863 |
aatgtgtctgtaagaagactccgtgtggccgtccgcagctacaactataacagtgttgatgcttgtcaactaggaacaagtatcccgaggctattccaat |
6193764 |
T |
|
| Q |
418 |
gtcaaatagctactgactcctccattacctttaatttgcttcctgatcgttccaacctgctaggattcatatactcggtggttctttctccagctggtgg |
517 |
Q |
| |
|
||| || |||| ||||||| ||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
6193763 |
gtctaacagcttctgactcttccattaccattacattgcttcctgatcgttccaacttgctgggattcatatactcagtggttctttctccagcaggtgg |
6193664 |
T |
|
| Q |
518 |
agatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggctaaatactgattgcacagaactg |
617 |
Q |
| |
|
| |||||| |||| || | |||||| ||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||| |||||||||| |
|
|
| T |
6193663 |
aaatggaatgaagggtggaggagctaggataaagtgtcaatgcaacttgggagaagaaggtataaaagctacctggctaaatactgatgtcacagaactg |
6193564 |
T |
|
| Q |
618 |
aactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacg |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
6193563 |
aactcggatcatgtttatgtgtggtatgatccattccattgtgacagtattctcaaattttatcaacccgagatttgtttcgagttctatgttacaaacg |
6193464 |
T |
|
| Q |
718 |
ata-tgg--gggaagttgatggttcaattggtattaaagagtgcggggtacgacttgtaggtgttgaagaattggagagtgttttaccggaattggaatt |
814 |
Q |
| |
|
||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||| || |||||| |
|
|
| T |
6193463 |
atactggccgggaagttgatggttcagttggtattaaagagtgtggggtacgactagtaagtgttcaagaattggagagtgttttgcc------ggaatt |
6193370 |
T |
|
| Q |
815 |
ggattcacaaaggaaagaagagttgaagaaggcagttgaattagaatcaggacatagtataa |
876 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||| |||| |
|
|
| T |
6193369 |
ggattcacaaaagaaagaagagttgaagaaggcggtggaattagaatcaggacgtaggataa |
6193308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 672
Target Start/End: Complemental strand, 6176413 - 6176364
Alignment:
| Q |
623 |
ggatcatgtttatgtgtggtatgatccattccattgtgacagcattctca |
672 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
6176413 |
ggatcatgtttttgtatggtatgatccataccattatgacagcatactca |
6176364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 876
Target Start/End: Original strand, 37452811 - 37453672
Alignment:
| Q |
18 |
gatggaagcaacatgaagaggttgcctgaaagcattaaaaatcttgaagaattggaaattttgtctttggtgaattgcagggagcttgagtgcataccag |
117 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| || ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37452811 |
gatgggagcaacatgaaaaggttgcctgaaagcattaagaaacttgaagaactggaaattctttctttggtgaattgcagggagcttgagtgcataccag |
37452910 |
T |
|
| Q |
118 |
agcttccacctctcatcacagtgttaaatgcagttaactgcacgtcactcatttcagtgtcaagtctaaaaaatttagcaacaaagatgatgggaaaaac |
217 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| |||||||| || || |||||||||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37452911 |
agcttccacctctcgtcacactgttaaatgcagtgaactgcacatccctggtttcagtgtcaaatctaaaaggattagcaacaatgatgatgggaaaaac |
37453010 |
T |
|
| Q |
218 |
caaacacatttcattcagtaacagcttgaatttggatggacattcacttagccttataatgaaaagtctcaatttaacaatgatgagtgctgtgtttcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37453011 |
caaacacatttcattcagtaacagcttgaatttggatggacattcactcagccttataatggaaaatctcaatttaacaatgatgagtgctgtgtttcaa |
37453110 |
T |
|
| Q |
318 |
aatgtgtctgtaagaagacttcgtgtggccgttcacagctacaattataccagtgttgatacttgtgaaccaggaacatgtatcccgagtctgttgcaat |
417 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||| ||||| |||||||||| |||||||||| ||||| ||| |
|
|
| T |
37453111 |
aatgtgtctgtaagaagactccgtgtgaaagttcacagctacaactataacagtgttgatgcttgtcgaccaggaacaagtatcccgaggctgttcaaat |
37453210 |
T |
|
| Q |
418 |
gtcaaatagctactgactcctccattacctttaatttgcttcctgatcgttccaacctgctaggattcatatactcggtggttctttctccagctggtgg |
517 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||| ||||||||||| ||||||||| |||| ||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
37453211 |
gtcaaacagctgctgactcctccattaccattacgttgcttcctgaacgttccaacttgcttggatttatatactcagtggttctttctccagcaggtgg |
37453310 |
T |
|
| Q |
518 |
agatggaacgaagaagggtgaagctagaataaagtgtcaatgcaacttgggagaacaaggtataaaggttagctggctaaatactgattgcacagaactg |
617 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || ||||||||| |
|
|
| T |
37453311 |
aaatggaatgaagaagggtgaagctcgaataaagtgtcaatgcagcttgggaaaagaaggtataaaggcttcctggctaaatactcatgtcacagaacta |
37453410 |
T |
|
| Q |
618 |
aactcggatcatgtttatgtgtggtatgatccattccattgtgacagcattctcaaatttgataaacctgagatttgttttgagttctgtgttacaaacg |
717 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
37453411 |
aactcagatcatacttatgtgtggtatgatccattccattgtgacagcattctcaaattttatcaacctaaaatttgttttgagttctatgttacaaacg |
37453510 |
T |
|
| Q |
718 |
a---tatgggggaagttgatggttcaattggtattaaagagtgcggggtacgacttgtaggtgttgaagaattggagagtgttttaccggaattggaatt |
814 |
Q |
| |
|
| || |||||||||||| |||||||| |||||||||||| |||||||||| ||| |||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
37453511 |
atactactggggaagttgatagttcaattcatattaaagagtgtggggtacgacaagtaagtgttgcagaattggagactgttttgccggaattggaatt |
37453610 |
T |
|
| Q |
815 |
ggattcacaaaggaaagaagagttgaagaaggcagttgaattagaatcaggacatagtataa |
876 |
Q |
| |
|
|||||| |||| |||| |||| |||||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
37453611 |
ggattcgcaaaagaaaaaagatttgaagaaggcagtggaattagaatcaggacgtaggataa |
37453672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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