View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_138 (Length: 413)
Name: NF8981_low_138
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 33001115 - 33000715
Alignment:
| Q |
15 |
gacatcagaacataatctccactttgtaccctcaccatctccagtattttgtcagtcgcccgctgacggattatcatcaacatttgttagtttttaagac |
114 |
Q |
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| T |
33001115 |
gacatcagaacataatccccactttgtaccctctccatctctagtattttgtcagtcgcccgctgacggattatcatcaacatttgttagtttttaagcc |
33001016 |
T |
|
| Q |
115 |
taggcttttcttttaaactcatttggtct--tctacctctgtcagcattacggatgtaacaacataaagataagaaacaactataacatgctaaccactt |
212 |
Q |
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| T |
33001015 |
taggattttcttttaaactcatttggtcttctctacctctgtcagccttaccggtgtaacaacataaagataaggaacaactataacatgctaaccactt |
33000916 |
T |
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| Q |
213 |
gacgtgttgatagtatcaactgtt------------------acaaaataatatgagaatagggattgagctcttcagggaatgggaacaatcacaaagt |
294 |
Q |
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| T |
33000915 |
gacgtgttgatagtatcaactgttgcatggtggaaataaagaacaaaataatatgagaatagggactgagcccttcagggaatgggaacaatcacaaggt |
33000816 |
T |
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| Q |
295 |
gtactcgagacaccttttctctcttaacaaaatggtttacttaaatgcctattgactatgtttcctaagctatttataaaataagctatacaactaggtt |
394 |
Q |
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| T |
33000815 |
gtactcgaggcaccttttctctcttaacagaatggtttacttaaatgcctattgactctgtttcctaagctatttataaaataagctatacaactaggtt |
33000716 |
T |
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| Q |
395 |
g |
395 |
Q |
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| T |
33000715 |
g |
33000715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 85 - 388
Target Start/End: Complemental strand, 7948905 - 7948583
Alignment:
| Q |
85 |
ttatcatcaacatttgttagtttttaagactaggcttttcttttaaactcatttggtcttctacctctgtcagcattacggatgtaacaacataaagata |
184 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||| ||| ||||||||||||||||||| ||| | |||| | ||||| ||||||||||| |
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| T |
7948905 |
ttatcatcaacatttgtcagtttccaa-actaggcttttcttt-aaattcatttggtcttctacctccttcaaccttaccggtgtaaggacataaagata |
7948808 |
T |
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| Q |
185 |
agaaacaactataacatgctaaccacttgacgtgttgatagtatcaactgtt------------------acaaaataatatgagaatagggattgagct |
266 |
Q |
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|| |||||||||||||||||||| |||||| |||||| | ||||| |||| |||| | || ||||||||||||| ||||| |
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| T |
7948807 |
aggaacaactataacatgctaactacttgattagttgatggaatcaaatgttgcatgaaggaaaaagagaacaacagaacatgagaatagggactgagcc |
7948708 |
T |
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| Q |
267 |
cttcagggaatgggaacaatcacaaagtgtactcgagacaccttttctctcttaacaaaatggttta---cttaaatgcctattgactatgtttcctaag |
363 |
Q |
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| T |
7948707 |
cttcatggaatggaagcaatcacaaggtgtattcgaggcaccttttctctcttaacagaatgatttacttcttaaatgcctattgactctgtttcctaag |
7948608 |
T |
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| Q |
364 |
ctatttataaaataagctatacaac |
388 |
Q |
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| T |
7948607 |
ccatttataatgtaagctatacaac |
7948583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 7949079 - 7949022
Alignment:
| Q |
14 |
ggacatcagaacataatctccactttgtaccctcaccatctccagtattttgtcagtc |
71 |
Q |
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|||||||||||||||||| ||| || |||||||| ||||||||| ||||||||||||| |
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| T |
7949079 |
ggacatcagaacataatccccatttcgtaccctctccatctccattattttgtcagtc |
7949022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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