View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_141 (Length: 404)
Name: NF8981_low_141
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_141 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 50494670 - 50494417
Alignment:
| Q |
1 |
gcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttcaagaaag |
100 |
Q |
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| T |
50494670 |
gcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttcaagaaag |
50494571 |
T |
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| Q |
101 |
tatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcaaatcgt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50494570 |
tatctcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaacaattcttcacaatttgctttatatatcaaatcgt |
50494471 |
T |
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| Q |
201 |
ccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagt |
255 |
Q |
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| T |
50494470 |
ccacacacagaccgacaattgaaatcttt-cttcaacgtgtttcacaaatatagt |
50494417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 50493676 - 50493590
Alignment:
| Q |
249 |
atatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcttactataccatgctcttgatgtttgtt |
335 |
Q |
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| T |
50493676 |
atatagtatgctcatgatgacatttttcaaagttctcttgacagaaataaacttaaatcttactataccatgctcttggtgtttgtt |
50493590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 42971317 - 42971054
Alignment:
| Q |
1 |
gcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttcaagaaag |
100 |
Q |
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| T |
42971317 |
gcattcttccataccaaatatggacaagatttctcttgcatatttctgctgatgaataaaaattccattggcatcttgagttacttctaatccaagaagg |
42971218 |
T |
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| Q |
101 |
tatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcaaatcgt |
200 |
Q |
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| T |
42971217 |
tacctcatcttccccaaatcagtcatgtcaaaatgtttcttcatagagtctataaaaccttcaaataactcttcataatatcctgtatatatcagatcat |
42971118 |
T |
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| Q |
201 |
ccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatg |
264 |
Q |
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| T |
42971117 |
ctacatacagactcacaatcaaacactttccttcagcatgtttcacaaacaaagtatgctcatg |
42971054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 96 - 366
Target Start/End: Original strand, 10781721 - 10781991
Alignment:
| Q |
96 |
gaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcaa |
195 |
Q |
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||||||| |||| ||||| || |||| ||||||||| ||||||||||||||||| | ||||||||||| || |||||||||||| | | | ||||| |
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| T |
10781721 |
gaaagtacctcatcttccccaagtctgacatagcaaaattcttcttcatggagcatttgaaatcttcaaagaactcttcacaatttccagtgaagatcaa |
10781820 |
T |
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| Q |
196 |
atcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaa |
295 |
Q |
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| T |
10781821 |
gtcatctacatatagactgacaatcaatattttcccttcagtatgcttcacaaatagtgtatgctcatgtggacacttttcaaacttttgttgacagaag |
10781920 |
T |
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| Q |
296 |
taaacttaaatcttactataccatgctcttgatgtttgtttcaagtcatataaagcttttctcagcttgta |
366 |
Q |
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| T |
10781921 |
taagcttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttttttcaacttgta |
10781991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 348
Target Start/End: Original strand, 46431407 - 46431662
Alignment:
| Q |
93 |
caagaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatat |
192 |
Q |
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||||||||||| ||||||| || ||||| ||||| ||||||| |||||||| || |||| || || |||| |||| ||||||||||| | ||||||| |
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| T |
46431407 |
caagaaagtatctcatttttcccaaatcagtcatgacaaagtttttcttcatagaacacttgaagtcatcaattaatacttcacaatttccagtatatat |
46431506 |
T |
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| Q |
193 |
caaatcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacag |
292 |
Q |
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| T |
46431507 |
cagatcatccacatacaaactaacaattaagatcttgttttcagcatgctttacaaataaagtatgttaatgagggcatttctcaaaattctctttgcag |
46431606 |
T |
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| Q |
293 |
aaataaacttaaatcttactataccatgctcttgatgtttgtttcaagtcatataa |
348 |
Q |
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| T |
46431607 |
aagtaagcttctattttactataccatgctcttggtgcctgtttcaatccatataa |
46431662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 59240 - 59326
Alignment:
| Q |
232 |
ttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcttactatacca |
318 |
Q |
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| T |
59240 |
ttcaatatgttttacaaatagagtatgctcatgaggacatttatcaaagttttcttgatagaagtaggcttcaatctttctatacca |
59326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 59127 - 59176
Alignment:
| Q |
119 |
tctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataa |
168 |
Q |
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| T |
59127 |
tctgtcatagcaaaattcttcttcatagagcatttaaactcttcaaataa |
59176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 40610527 - 40610586
Alignment:
| Q |
81 |
ttacttcaacttcaagaaagtatttcattttcccaaaatctgtcatagcaaagttcttct |
140 |
Q |
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| T |
40610527 |
ttacttctacttcaagaaagtatctcatttttcccaaatctgtcatagcaaaattcttct |
40610586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 7849802 - 7849894
Alignment:
| Q |
232 |
ttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcttactataccatgctct |
324 |
Q |
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||||||||| || ||||| | |||||| |||||| | ||||||||||| ||||||| ||||||||| ||| || ||||||||||| ||||| |
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| T |
7849802 |
ttcaacatgctttacaaacagagtatgttcatgagggcatttttcaaaattttctttgcagaaataagcttctattttactataccaggctct |
7849894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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