View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_142 (Length: 402)

Name: NF8981_low_142
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_142
NF8981_low_142
[»] chr7 (15 HSPs)
chr7 (117-234)||(3651452-3651569)
chr7 (272-341)||(3680666-3680735)
chr7 (128-186)||(3702975-3703033)
chr7 (128-183)||(3705909-3705964)
chr7 (128-186)||(3694967-3695024)
chr7 (60-117)||(3653830-3653887)
chr7 (128-186)||(3685518-3685578)
chr7 (128-185)||(3693200-3693257)
chr7 (62-113)||(3651121-3651172)
chr7 (70-117)||(3675306-3675353)
chr7 (62-113)||(3706365-3706416)
chr7 (188-241)||(3700503-3700556)
chr7 (272-341)||(3708000-3708071)
chr7 (16-61)||(3679616-3679661)
chr7 (28-58)||(3703699-3703729)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 3651452 - 3651569
Alignment:
Q  117 cttctgctcgaaataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 216  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651452 cttcggctcgaaataagcagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 3651551  T
Q  217 ggttgaaagatggctctg 234  Q
    ||||||||||||||||||    
T  3651552 ggttgaaagatggctctg 3651569  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 3680666 - 3680735
Alignment:
Q  272 taattatctaaacaacctctaacttcacccttctgcttattcattagtttcccttctaccaatcttttaa 341  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  3680666 taattatctaaacaacctctaacttccccatcctgcttattgattagtttcccttctaccaatcttttaa 3680735  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 3703033 - 3702975
Alignment:
Q  128 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 186  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  3703033 aataaacagaatttgagacattattaaaagttacataaactgttgccacaattaatcat 3702975  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 3705964 - 3705909
Alignment:
Q  128 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaat 183  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  3705964 aataaacagaagttgagacattattaaaagttacataaactgttgctacaattaat 3705909  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 3695024 - 3694967
Alignment:
Q  128 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 186  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  3695024 aataaacaga-tttgagacattattaaaagttacataaactgttgctacaattaatcat 3694967  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 3653830 - 3653887
Alignment:
Q  60 aggagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtactattac 117  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  3653830 aggagtgtgttatagttgatggaagcttgtttttgtaacttagaccatgtactattac 3653887  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 3685578 - 3685518
Alignment:
Q  128 aataaacagaatttggga--cattattaaaagttacataaactgttgctacaattaatcat 186  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  3685578 aataaacagaatttgagagacattattaaaagttacataaactgttgctacaattaatcat 3685518  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 3693257 - 3693200
Alignment:
Q  128 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatca 185  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3693257 aataaacataatttaagacattattaaaagttacataaactgttgctacaattaatca 3693200  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 3651121 - 3651172
Alignment:
Q  62 gagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 113  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3651121 gagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3651172  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 3675353 - 3675306
Alignment:
Q  70 tatagttgaaggaggcttgtttttgtaacttagactatgtactattac 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3675353 tatagttgaaggaggcttgtttttctaacttagactatgtactattac 3675306  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 3706416 - 3706365
Alignment:
Q  62 gagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 113  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3706416 gagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3706365  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 3700556 - 3700503
Alignment:
Q  188 agatgtcttccaaactggggatcacctagggttgaaagatggctctgaaatgag 241  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  3700556 agatgtcttccaaactggggatcacctagggttaaaagatgactctgatatgag 3700503  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 3708000 - 3708071
Alignment:
Q  272 taattatctaaacaacctctaacttcacccttctgcttat--tcattagtttcccttctaccaatcttttaa 341  Q
    |||||||| |||||||||| |||||| ||||||| | |||  | ||||||||||||||||||||||||||||    
T  3708000 taattatcaaaacaacctccaacttcccccttctacctatattgattagtttcccttctaccaatcttttaa 3708071  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 3679661 - 3679616
Alignment:
Q  16 tcaatccatttgttggctcaagtttaatatgattcgactattgcag 61  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||    
T  3679661 tcaatccaattgttggctcaagtttaatatgatttgactagtgcag 3679616  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 3703729 - 3703699
Alignment:
Q  28 ttggctcaagtttaatatgattcgactattg 58  Q
    |||||||||||||||||||||||||||||||    
T  3703729 ttggctcaagtttaatatgattcgactattg 3703699  T

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