View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_146 (Length: 394)
Name: NF8981_low_146
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_146 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 43862654 - 43863018
Alignment:
| Q |
19 |
gtttaattgtttcgaaccaatccaaaattaacgacgcttatttaattttgaagatcaacgtaattaacaaccattagaatgtgcacaagtgactgatgta |
118 |
Q |
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| T |
43862654 |
gtttaattgtttcgaaccaaaa-aaaattaacgatgcttatttaattttgaa-atcaacataattaacaaccattagaatgtgcacaagtgactgatgta |
43862751 |
T |
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| Q |
119 |
gaatgtacgtgaacgatgtaaacctcatatcaccaaagttaggttnnnnnnnnnnnnnnnnnnnnntgaagttggaaactacaaccagtagtctaagtct |
218 |
Q |
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| T |
43862752 |
gaatgtacgtgaacgatgtaaacctcatatcaccaaagttaggttaaaaaatcaacaaaacaaaaatgaagttggaaactacaactagtagtctaagtct |
43862851 |
T |
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| Q |
219 |
actatttatcgttgaaaattgaaactaaca-nnnnnnnaaacaagtcgaaattaacactcaattgaatattgaaatttgagagcatagtaatggttgtgg |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862852 |
actatttatcgttgaaaattgaaactaacattttttttaaacaagtcgaaattaacactcaattgaatattgaaatttgagagcatagtaatggttgtgg |
43862951 |
T |
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| Q |
318 |
atgatacacgtaaaaaattattggaccgtgcacatcctgactgactcccaattattcataagtataat |
385 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||| |
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| T |
43862952 |
atgatacacgtaaaaaattattggatcgtgcatatcctgacttact-ccaattattcataagtataat |
43863018 |
T |
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