View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_148 (Length: 392)
Name: NF8981_low_148
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_148 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 49979038 - 49978671
Alignment:
| Q |
19 |
atacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggatgatg |
118 |
Q |
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| T |
49979038 |
atacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggatgatg |
49978939 |
T |
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| Q |
119 |
atctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatgactc |
218 |
Q |
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| T |
49978938 |
atctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatgactc |
49978839 |
T |
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| Q |
219 |
acatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggatgatg |
318 |
Q |
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| T |
49978838 |
acatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggatgatg |
49978739 |
T |
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| Q |
319 |
aacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatctcctatg |
386 |
Q |
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| T |
49978738 |
aacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatctcctatg |
49978671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
125 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
181 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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