View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_150 (Length: 391)
Name: NF8981_low_150
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_150 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 34422822 - 34423197
Alignment:
| Q |
15 |
cacagaccaaggtgattcctcttattatgttattatctgtagcattgtttaatgctattttatgtcatgcgtatannnnnnnaactgttgtgttaaatag |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34422822 |
cacagaccaaggtgattcctattattatgttattatctgtagcattgtttaatgctattttatgtcatgcgtatactcccccaactgttgtgttaaatag |
34422921 |
T |
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| Q |
115 |
cgttgtcaaactaatctaacctcaaatttctgtcattgtatatcgtggaacatctatataaaagagttctgtgtctttttta-cgaagaaaggaaaaact |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
34422922 |
cgttgtcaaactaatctaacctcaactttctgtcattgtatatcgtggaacatctatataaaagagttttgtgtcttttttaacgaagaaaggaaaaact |
34423021 |
T |
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| Q |
214 |
gaaaaaatcagttacttcgaggttctgttcattaatgatttctctcattcatgtaccatcttaaatatattcatgttttgcagtggaggtgagagtgatt |
313 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
34423022 |
gaaaaaattagttacttcgaggttctgttcattaatgatttctc--attcatgtgccatcttaaatatattcatgttttgtagtggaggtgagagggatt |
34423119 |
T |
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| Q |
314 |
aaaagttactccatctggccttaattataagcaaaagtaggtcaaagaaagttgatgtaattttcgaccaaatacatc |
391 |
Q |
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| T |
34423120 |
aaaagttactccatctggccttaattataagcaaaagtaggtcaaagaaagttgatgtaattttcgaccaaatacatc |
34423197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 34423244 - 34423192
Alignment:
| Q |
320 |
tactccatctggccttaattataagcaaaagtaggtcaaagaaagttgatgta |
372 |
Q |
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| T |
34423244 |
tactccctctagccttaattataagcaaaagtaggtcaaaaaaagttgatgta |
34423192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 3167695 - 3167645
Alignment:
| Q |
320 |
tactccatctggccttaattataagcaaaagtaggtcaaagaaagttgatg |
370 |
Q |
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|||||| | |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3167695 |
tactccctgtggcctaaattataagcaaaagtaggtcaaagaaagttgatg |
3167645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 11558493 - 11558442
Alignment:
| Q |
321 |
actccatctggccttaattataagcaaaagtaggtcaaagaaagttgatgta |
372 |
Q |
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| T |
11558493 |
actccctctggccttaattataagcaaaactaggtcaaagaaaatcgatgta |
11558442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 372
Target Start/End: Original strand, 11558353 - 11558384
Alignment:
| Q |
341 |
taagcaaaagtaggtcaaagaaagttgatgta |
372 |
Q |
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| T |
11558353 |
taagcaaaagtaggtcaaagaaagttgatgta |
11558384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 23314672 - 23314714
Alignment:
| Q |
327 |
tctggccttaattataagcaaaagtaggtcaaagaaagttgat |
369 |
Q |
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| T |
23314672 |
tctggcattgattataagcaaaagttggtcaaagaaagttgat |
23314714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 364
Target Start/End: Complemental strand, 23314778 - 23314749
Alignment:
| Q |
335 |
taattataagcaaaagtaggtcaaagaaag |
364 |
Q |
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| T |
23314778 |
taattataagcaaaagtaggtcaaagaaag |
23314749 |
T |
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