View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_152 (Length: 387)
Name: NF8981_low_152
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_152 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 39651864 - 39651506
Alignment:
| Q |
21 |
agcgaggacgcaaagttcacagttttggaacgatgttcaatgggatagacaatatcagtgctaggaacacaatgacaaccaacggcattacacctcctgg |
120 |
Q |
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| T |
39651864 |
agcgaggacgcaaagttcacagttttggaacgatgttcaatgggatagacaatatcagtgctaggaacacaatgacaaccaacggcattacacctcctgg |
39651765 |
T |
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| Q |
121 |
tgcacttggtttaaacaatcttgtcaatccatacggtgttagatatcctgctgctgcaacgagactttcatccagaagaaacggttatggacaagatggt |
220 |
Q |
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| T |
39651764 |
tgcacttagtttaaacaatcttgtcaatccatacggtgttagatatcctgctgctgcaacgagactttcatccagaagaaatggttatggacaagatggt |
39651665 |
T |
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| Q |
221 |
gcttggatcgctaatacatttaactcattgctcacacaaccaaactatagtcaaacacttggaactcaactaccttatcagtcaaataataatctccagg |
320 |
Q |
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| T |
39651664 |
gcttggatcgctaatacatttaactcattgctcacacaaccaaactatagtcaaacacttggaactcaactaccttatcagtcaaataataatctccagg |
39651565 |
T |
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| Q |
321 |
gtaatgcaaagaagtctagtactccatctaccggaagtagtcacctctttgatgatgtc |
379 |
Q |
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| T |
39651564 |
gtaatgcaaagaagtctagtactccatctactggaagtagtcacctctttgatgatgtc |
39651506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 39656547 - 39656479
Alignment:
| Q |
300 |
agtcaaataataatctccagggtaatgcaaagaagtctagtactccatctaccggaagtagtcacctct |
368 |
Q |
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| T |
39656547 |
agtcaaataataatatctcgggtgatgcaaagaagtcaagtactccatctacttgaagcagtcacctct |
39656479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 39661465 - 39661430
Alignment:
| Q |
237 |
catttaactcattgctcacacaaccaaactatagtc |
272 |
Q |
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| T |
39661465 |
catttaactcattgctcacacaaccaaactatagtc |
39661430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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