View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_154 (Length: 380)
Name: NF8981_low_154
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_154 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 35910474 - 35910837
Alignment:
| Q |
17 |
acatcatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctt |
116 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910474 |
acataatgaccagcataactctctccagttatgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctt |
35910573 |
T |
|
| Q |
117 |
tggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910574 |
tggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccac |
35910673 |
T |
|
| Q |
217 |
tgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttca |
316 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910674 |
tgcatatttcataatgatataagttggtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttca |
35910773 |
T |
|
| Q |
317 |
ccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910774 |
ccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
35910837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 35940250 - 35940614
Alignment:
| Q |
17 |
acatcatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctt |
116 |
Q |
| |
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|||| |||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
35940250 |
acataatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatcct |
35940349 |
T |
|
| Q |
117 |
tggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccac |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
35940350 |
tggcagttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccac |
35940449 |
T |
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| Q |
217 |
tgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattgatgatgatgatgattgtttc |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35940450 |
tgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcataaagaaacaatgtaattatattgatgatgatgatgattgtttc |
35940549 |
T |
|
| Q |
316 |
accttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
380 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
35940550 |
accttcattccaagcatatgggttacggtatagtgtttttccatcagagttgactctgaagggtc |
35940614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 35921281 - 35921635
Alignment:
| Q |
17 |
acatcatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctt |
116 |
Q |
| |
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|||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
35921281 |
acataatgaccggcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaagacataggcatctt |
35921380 |
T |
|
| Q |
117 |
tggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccac |
216 |
Q |
| |
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| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||| |
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| T |
35921381 |
tagcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccac |
35921480 |
T |
|
| Q |
217 |
tgcatatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttca |
316 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||| |||| || |||||| |||||| | | ||| |
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|
| T |
35921481 |
tgcatatttcataaggagttaagtttctaagataatcatgtctcagaaatgcatcataaataacacattagttatatcgatgatca---------tctca |
35921571 |
T |
|
| Q |
317 |
ccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
380 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35921572 |
ccttcattccaagcatatgggttacggtataatgttttgccatcagagttgactctgaagggtc |
35921635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 380
Target Start/End: Original strand, 35914915 - 35915264
Alignment:
| Q |
23 |
tgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggcag |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| || | |
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| T |
35914915 |
tgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgatgaggaaaacataggcatctttagcgg |
35915014 |
T |
|
| Q |
123 |
ttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcata |
222 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || |||||||| |
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| T |
35915015 |
tggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcata |
35915114 |
T |
|
| Q |
223 |
tttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattgatgatgatgatgattgtttcaccttc |
321 |
Q |
| |
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|||||||| |||||||||| |||||||| ||||||||||| ||||||||| |||||| || || |||||| |||||||||| |||||||| |
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| T |
35915115 |
tttcataaggatataagttggtaagataatcatgtctcaggcatgcatcataaagaaataaattagttatat---------tgatgattgtctcaccttc |
35915205 |
T |
|
| Q |
322 |
attccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
380 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||| |
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|
| T |
35915206 |
attccaagcatatgggttgcggtataatgtttttccatcagaattgactctgaagggtc |
35915264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 35927874 - 35928229
Alignment:
| Q |
17 |
acatcatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctt |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||| || | || | |
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| T |
35927874 |
acataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatcct |
35927973 |
T |
|
| Q |
117 |
tggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccac |
216 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || || |
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|
| T |
35927974 |
tggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaac |
35928073 |
T |
|
| Q |
217 |
tgcatatttcataatgatataagtttgtaagatattcatgtctcagaa---atgcatcataagaaacaatgtaattatattgatgatgatgatgattgtt |
313 |
Q |
| |
|
||||||||||||||||||| | | ||||| ||||||||||| |||| ||||||||||||||||||| | ||| ||| |||||||||| |
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| T |
35928074 |
tgcatatttcataatgataaac--tggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctat---------cgatgattgtt |
35928162 |
T |
|
| Q |
314 |
tcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
380 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35928163 |
tcaccttcagtccaagcatattggttacggtatagtgttttgccatcagagttgattctgaagggtc |
35928229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 35934687 - 35935045
Alignment:
| Q |
17 |
acatcatgaccagcataactctctccagttacgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctt |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
35934687 |
acataatgaccagcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaaaacataggcatctt |
35934786 |
T |
|
| Q |
117 |
tggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccac |
216 |
Q |
| |
|
| ||||| ||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || || || |
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|
| T |
35934787 |
tagcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaac |
35934886 |
T |
|
| Q |
217 |
tgc--atatttcataatgatataagtttgtaagatattcatgtctcagaaatgcatcat-aagaaacaatgtaattatattgatgatgatgatgattgtt |
313 |
Q |
| |
|
||| |||||| |||||| |||| || || |||| |||||||||| |||||||| || ||||| || |||| |||| ||| |||||||| |
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| T |
35934887 |
tgcatatattttataatg--ataaattggttagatgttcatgtctcttaaatgcataatggagaaaacatttaatcatat------cgattatgattgtc |
35934978 |
T |
|
| Q |
314 |
tcaccttcattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtc |
380 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||| |
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|
| T |
35934979 |
ataccttcactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtc |
35935045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 6208979 - 6209023
Alignment:
| Q |
159 |
tgtttgagtaggaaaatcctactcctgctggagattctaagaaga |
203 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| ||||| |||| |
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| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaaga |
6209023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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