View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_155 (Length: 379)
Name: NF8981_low_155
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_155 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 10967577 - 10967905
Alignment:
| Q |
18 |
attgaattaggcaaactcatagtaactcatcacccttcattttccatcacaattttaattcttacaccacccaacaaaaacaccaatatcaacaaaaaca |
117 |
Q |
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| T |
10967577 |
attgaattaggcaaactcatagtaactcatcacccttcatttttcatcacaattttaattcttacaccacccaac------------------aaaaaca |
10967658 |
T |
|
| Q |
118 |
ccctttctccacaagaacaatacatagcctcagtttcttccacattcccttcaatcaattttcattacattcctctaatttcaccccccacaacacttcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10967659 |
ccctttctccacaagaacaatacatagcctcagtttcttccacattcccttcaatcaattttcattacattcctctaatttcaccccccacaacacttcc |
10967758 |
T |
|
| Q |
218 |
accaccacctttacttacccttgagctctctcaccaaagcaatcactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10967759 |
accaccacctttacttacccttgagctctctcaccaaagcaataactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagtt |
10967858 |
T |
|
| Q |
318 |
atcttagattttctcacatatgatgcctcaaaagtcactaccaagct |
364 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
10967859 |
atcttagattttctcacatataatgcctcgaaagtcactacaaagct |
10967905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 11001718 - 11002058
Alignment:
| Q |
18 |
attgaattaggcaaactcatagtaactcatcacccttcattttccatcacaattttaattcttacaccacccaacaaaaacaccaatatcaacaaaaaca |
117 |
Q |
| |
|
||||||||||| ||||| ||| ||||||| ||||||| |||||||| | |||| |||||||||||||||||| ||||||||| || | ||||||| ||| |
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| T |
11001718 |
attgaattaggaaaactaatattaactcaccaccctttgttttccattaaaattctaattcttacaccacccaccaaaaacacaaacaccaacaaagaca |
11001817 |
T |
|
| Q |
118 |
ccctttctccacaagaacaatacatagcctcagtttcttccacattcccttcaatcaattttcattacattcctctaatttcaccccccacaacacttcc |
217 |
Q |
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| T |
11001818 |
ccctttccccacaagaacaatacattgtcaatgtttcagccacatttccgtcaattaatttccactatattcctccaatttcattctctacaacacttcc |
11001917 |
T |
|
| Q |
218 |
accaccacctttacttacccttgagctctctcaccaaagcaatcactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagtt |
317 |
Q |
| |
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| T |
11001918 |
aaca-cac--ttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggtatt |
11002014 |
T |
|
| Q |
318 |
atcttagattttctcacatatgatgcctcaaaagtcactaccaa |
361 |
Q |
| |
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|
| T |
11002015 |
atcttagatttcctcacctatagtgcctcacaagtcaccaccaa |
11002058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 10981486 - 10981792
Alignment:
| Q |
19 |
ttgaattaggcaaactcatagtaactcatcacccttcattttccatcacaattttaattcttacaccacccaacaaaaacaccaatatcaacaaaaacac |
118 |
Q |
| |
|
|||| ||||| ||||| ||| |||||| |||||||||||||||||||||||| | ||||||||||| || ||||||||||| || | |||||| ||| |
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| T |
10981486 |
ttgagttaggaaaactaatatcaactcaccacccttcattttccatcacaattctcattcttacacccccaaacaaaaacacaaacacaaacaaaggcac |
10981585 |
T |
|
| Q |
119 |
cctttctccacaagaacaatacatagcctcagtttcttccacattcccttcaatcaattttcattacattcctctaatttcaccccccacaacacttcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| || ||||| ||||| ||||||||||||| ||||||| ||| ||||||||| |
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|
| T |
10981586 |
cctttctccacaagaacaatacatagccaatgtttcgaccacatttccctcaattaatttccattacattcctccaatttcattccctacaacactt--- |
10981682 |
T |
|
| Q |
219 |
ccaccacctttacttacccttgagctctctcaccaaagcaatcactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagtta |
318 |
Q |
| |
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|||| || ||| |||||||| | | ||| || ||||| || ||||| | || |||||||| || ||||||||||||||||||||||||| |||| |
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| T |
10981683 |
ccacaactcttatgcacccttgaagtttgtcaacatagcaacaaccatgttgagaacattctccattctatttccaaaaccacaaacctcaaagctgtta |
10981782 |
T |
|
| Q |
319 |
tcttagattt |
328 |
Q |
| |
|
|||||||||| |
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|
| T |
10981783 |
tcttagattt |
10981792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 11078866 - 11078950
Alignment:
| Q |
19 |
ttgaattaggcaaactcatagtaactcatcacccttcattttccatcacaattttaattcttacaccacccaacaaaaacaccaa |
103 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| ||||||||||||||||||| |||| | ||||| ||||| |||||| || ||||||| |
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| T |
11078866 |
ttgagttaggaaaactcatactaactcaccacccttcattttccatcaaaattctcattctcacaccccccaaccaagacaccaa |
11078950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 11018096 - 11018149
Alignment:
| Q |
18 |
attgaattaggcaaactcatagtaactcatcacccttcattttccatcacaatt |
71 |
Q |
| |
|
||||| ||||| ||||||||| |||| ||| ||||||||| ||||||||||||| |
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|
| T |
11018096 |
attgagttaggtaaactcatattaacacataacccttcatattccatcacaatt |
11018149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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