View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_157 (Length: 373)
Name: NF8981_low_157
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_157 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 36791827 - 36791462
Alignment:
| Q |
16 |
aaacttaattggaccctcaccctaaaattcacctatattatgttctcattttta-----------------tgcaagacctgtaattttgttttgtatat |
98 |
Q |
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| T |
36791827 |
aaacttaattggactctcaccctagaattcacctatattatgttctcatttttaccttttattattttggtttttatacctgtaattttgttttatatat |
36791728 |
T |
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| Q |
99 |
tttagttgtccttcttcatataagattcatgatgtgaaagatgagatgagattcatatataatgtcatgaccaatgtcattatgtgtgacaaataaaata |
198 |
Q |
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| T |
36791727 |
tttagttgtccttcttcagataagattcatgatgtgaaagatgagatgagattcatatataatgtcatgaccaatgtcattatgtgtgacaaataaaata |
36791628 |
T |
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| Q |
199 |
tattattttcaattagatatagatgccaagtccattataagaagagacaaaaacagtgaatggttttaatttttcatggtttgaaacccctggtatttgg |
298 |
Q |
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| T |
36791627 |
tattattttcaattagatatagatgccaagtccattataagaagagacaaaaacagtgaatggttttaatttttcatggtttgaaacccctggtatttgg |
36791528 |
T |
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| Q |
299 |
att-----ccataccataccatttataaccaaaaccgttcattctaaagaagagcccacagactat |
359 |
Q |
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| T |
36791527 |
attacataccataccataccatttataaccaaaaccattcattctaaagaagagcccacagactat |
36791462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 39466915 - 39466883
Alignment:
| Q |
18 |
acttaattggaccctcaccctaaaattcaccta |
50 |
Q |
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| T |
39466915 |
acttaattggaccctcaccctagaattcaccta |
39466883 |
T |
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