View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_160 (Length: 371)
Name: NF8981_low_160
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_160 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 39235887 - 39236224
Alignment:
| Q |
19 |
cttacacatgaacatctaattcaaaagttaaaaataaaagaagaaaagttagtagaagaagttattattttgttgtcacaccaagtattaggaaccaaca |
118 |
Q |
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| T |
39235887 |
cttacacatgaacatctaattcaaaagttaaaaataaaagaagaaaagttagtagaagaagtaattatttttttgtcacaccaagtattaggaaccaaca |
39235986 |
T |
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| Q |
119 |
aaatataatcacaatcacaacctttctgtattaaaaacagattgatgcccccttggtggtgtaacagaatgatgactaacataatcttcatttgttaaca |
218 |
Q |
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| T |
39235987 |
aaatataatcacaatcacaacctttctgtattaaaaacagattgatgcccccttggtggtgtaacagaatgatgactaacataatcttcatttgttaaca |
39236086 |
T |
|
| Q |
219 |
ctggtgttcccaatccatcttcagtaccagctccaacatattgttgaactaccaacactgaagcaattgttgcaaaatcagatgatgctaacaaatcacc |
318 |
Q |
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| T |
39236087 |
ctggtgttcccaatccatcttcagtaccagctccaacatattgttgaactaccaacactgaagcaattgttgcaaaatcagatgatgctaacaaatcacc |
39236186 |
T |
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| Q |
319 |
aattgctcctaattcaggacactcactccagtcagtta |
356 |
Q |
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| T |
39236187 |
aattgctcctaattcaggacactcactccagtcagtta |
39236224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 44054256 - 44054359
Alignment:
| Q |
251 |
ccaacatattgttgaactaccaacactgaagcaattgttgcaaaatcagatgatgctaacaaatcaccaattgctcctaattcaggacactcactccagt |
350 |
Q |
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| T |
44054256 |
ccaacatgttgttgaactaccaaaactgaagcacttgctgcaaaatctgaagctgctaataagtcaccaattgcacccatttcaggacactcactccaat |
44054355 |
T |
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| Q |
351 |
cagt |
354 |
Q |
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|||| |
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| T |
44054356 |
cagt |
44054359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 2813391 - 2813317
Alignment:
| Q |
274 |
cactgaagcaattgttgcaaaatcagatgatgctaacaaatcaccaattgctcctaattcaggacactcactcca |
348 |
Q |
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|||||||||| ||||| |||| || || || ||||||||||| ||||| |||||||| || ||||| |||||||| |
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| T |
2813391 |
cactgaagcacttgtttcaaagtctgaagaagctaacaaatctccaatggctcctaactcgggacattcactcca |
2813317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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