View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_161 (Length: 370)
Name: NF8981_low_161
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_161 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 44225951 - 44225599
Alignment:
| Q |
17 |
actaataaagtgattagttgacagtataaaactttttaattgacaatgtatcaaaattaaactcattgcattttttattggttactcccaatttacattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225951 |
actaataaagtgattagttgacagtataaaactttttaattgacaatgtatcaaaattaaactcattgcattttttattggttactcccaatttacattg |
44225852 |
T |
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| Q |
117 |
tccttgcatgggctctatcatgtcttgcatgctataataaagttatgtttcatgttgtatgttgaannnnnnnacaagccaacggtattaagttgtatat |
216 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
44225851 |
tccttgcatgggctttatcatgtcttgcatgccataataaagttatgtttcatgttgtatgttgaatttttt-acaagccaacggtattaagttttatat |
44225753 |
T |
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| Q |
217 |
tgtataattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225752 |
tgtataattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaa |
44225653 |
T |
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| Q |
317 |
ctacaggagagatgttggttggaccagccaatgcattgttcatggatgaaattt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225652 |
ctacaggagagatgttggttggaccagccaatgcattgttcatggatgaaattt |
44225599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 44236764 - 44236416
Alignment:
| Q |
17 |
actaataaagtgattagttgacagtataaaacttttta-attgacaatgtatcaaaattaaactcattgcattttttattggttactcccaatttacatt |
115 |
Q |
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| T |
44236764 |
actaataaagtgattagttgaca--atgaaactttttacattgacaatgtatcaaaactaaactcattgcatttttgattggctactcccaatttacgtt |
44236667 |
T |
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| Q |
116 |
gtccttgcatgggctctatcatgtcttgcatgctataataaagttatgtttcatgttgtatgttgaannnnnnnacaagccaacggtattaagttgtata |
215 |
Q |
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| T |
44236666 |
gtccttgcatgggctctatcatgtgttgcatgccataataaagttgtgtttcatgttgtatgttgaatttttttacaagccaacggtattaagttgtata |
44236567 |
T |
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| Q |
216 |
ttgtataattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgta |
315 |
Q |
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| T |
44236566 |
ttgtataattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgta |
44236467 |
T |
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| Q |
316 |
actacaggagagatgttggttggaccagccaatgcattgttcatggatgaa |
366 |
Q |
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| T |
44236466 |
actacaggagagatgttggttggaccagccaatgcattgttcatggatgaa |
44236416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 44213591 - 44213438
Alignment:
| Q |
217 |
tgtataattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaa |
316 |
Q |
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|||| ||||||| |||||||||||||||||||||| || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||| | |
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| T |
44213591 |
tgtacaattttgcagattttggggttggatatatgtgcggataccatggtaggggatgaaatgttgcgtggtatctccggaggacaaaggaagcgtgtta |
44213492 |
T |
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| Q |
317 |
ctacaggagagatgttggttggaccagccaatgcattgttcatggatgaaattt |
370 |
Q |
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| T |
44213491 |
ccacaggagagatgttggttggaccagccaatgcattgttcatggatgaaattt |
44213438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 14334056 - 14334000
Alignment:
| Q |
26 |
gtgattagttgacagtataaaacttttta-attgacaatgtatcaaaattaaactca |
81 |
Q |
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|||||| ||||||||||||||||||| || | ||| |||||||||||||||||||| |
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| T |
14334056 |
gtgatttgttgacagtataaaactttctacctagaccatgtatcaaaattaaactca |
14334000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 233 - 368
Target Start/End: Complemental strand, 2900878 - 2900743
Alignment:
| Q |
233 |
ttttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacaggagagatgtt |
332 |
Q |
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| T |
2900878 |
ttttggggttggatgtatgtgctgatactatggtggggaatgaaatgttacgtggtatctccggaggacaaagaaagcgagttaccacaggagaaatgtt |
2900779 |
T |
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| Q |
333 |
ggttggaccagccaatgcattgttcatggatgaaat |
368 |
Q |
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| T |
2900778 |
ggttggaccagcaaatgctttattcatggatgaaat |
2900743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 368
Target Start/End: Original strand, 2884075 - 2884221
Alignment:
| Q |
222 |
aattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactaca |
321 |
Q |
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|||| ||||| ||||||| |||||| |||| ||||| || |||||||| |||||||||| |||||||| || ||||| || || ||||| || || ||| |
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| T |
2884075 |
aattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccaca |
2884174 |
T |
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| Q |
322 |
ggagagatgttggttggaccagccaatgcattgttcatggatgaaat |
368 |
Q |
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| T |
2884175 |
ggagagatgttggtcgggccagcaaatgcattattcatggatgaaat |
2884221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 2874089 - 2874201
Alignment:
| Q |
230 |
agattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacaggagagat |
329 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| || ||||| || ||| | | || |||||||| || |
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| T |
2874089 |
agatattggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaat |
2874188 |
T |
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| Q |
330 |
gttggttggacca |
342 |
Q |
| |
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| T |
2874189 |
gttggttggacca |
2874201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 39592165 - 39592078
Alignment:
| Q |
236 |
tggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacagg |
323 |
Q |
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| T |
39592165 |
tgggattggagatatgtgcagatactgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacagg |
39592078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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