View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_169 (Length: 360)

Name: NF8981_low_169
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_169
NF8981_low_169
[»] chr5 (9 HSPs)
chr5 (40-353)||(11334917-11335230)
chr5 (222-353)||(11335137-11335269)
chr5 (1-45)||(11320767-11320811)
chr5 (140-277)||(11335202-11335344)
chr5 (258-323)||(9511886-9511952)
chr5 (138-353)||(11335121-11335341)
chr5 (286-319)||(11335312-11335345)
chr5 (139-212)||(11335312-11335384)
chr5 (298-345)||(9511903-9511953)
[»] chr7 (10 HSPs)
chr7 (3-106)||(26403200-26403303)
chr7 (123-212)||(44338660-44338748)
chr7 (286-323)||(26403160-26403197)
chr7 (269-330)||(46963574-46963634)
chr7 (258-335)||(46963714-46963790)
chr7 (25-95)||(3889163-3889238)
chr7 (28-106)||(10236744-10236822)
chr7 (108-170)||(26403166-26403228)
chr7 (212-346)||(46963631-46963763)
chr7 (259-323)||(21813928-21813991)
[»] chr2 (10 HSPs)
chr2 (189-323)||(38583931-38584060)
chr2 (133-303)||(38583910-38584079)
chr2 (286-335)||(29409358-29409407)
chr2 (263-335)||(8986463-8986534)
chr2 (117-212)||(29409336-29409429)
chr2 (287-335)||(38583917-38583965)
chr2 (63-123)||(1173120-1173178)
chr2 (258-335)||(8986315-8986391)
chr2 (176-346)||(8986342-8986513)
chr2 (5-45)||(32290876-32290916)
[»] chr4 (8 HSPs)
chr4 (140-335)||(16870994-16871189)
chr4 (259-321)||(16871155-16871216)
chr4 (214-346)||(16871021-16871147)
chr4 (258-335)||(16870846-16870922)
chr4 (263-348)||(16871166-16871255)
chr4 (54-106)||(7259241-7259292)
chr4 (296-346)||(16870873-16870925)
chr4 (222-343)||(16871096-16871215)
[»] chr8 (3 HSPs)
chr8 (49-112)||(32041645-32041708)
chr8 (123-212)||(20242337-20242425)
chr8 (123-212)||(20250735-20250823)
[»] chr6 (6 HSPs)
chr6 (139-321)||(22860737-22860918)
chr6 (176-353)||(22860743-22860919)
chr6 (296-347)||(22860895-22860946)
chr6 (298-347)||(18981357-18981407)
chr6 (59-112)||(18984209-18984262)
chr6 (140-210)||(18984142-18984211)
[»] chr1 (1 HSPs)
chr1 (93-243)||(9168107-9168258)
[»] chr3 (6 HSPs)
chr3 (189-250)||(42530806-42530868)
chr3 (258-335)||(42530833-42530913)
chr3 (259-335)||(50295679-50295757)
chr3 (286-320)||(50295873-50295907)
chr3 (258-330)||(42530805-42530870)
chr3 (304-347)||(50295884-50295928)
[»] scaffold0007 (2 HSPs)
scaffold0007 (59-112)||(14629-14682)
scaffold0007 (123-210)||(14663-14749)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 40 - 353
Target Start/End: Original strand, 11334917 - 11335230
Alignment:
Q  40 agaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaaacataaaaatcaataag 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  11334917 agaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacaaccatacaaaagaaccaatagagaggagcaaccaaacagaaaaatcaataag 11335016  T
Q  140 gagaagtgcaattcaatcaatcataagaatccataagggagaagtgcaaaatcaatctaaagaatcaaaagggaagaagtgaaatcaatcagaagaatta 239  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11335017 gagaagtgcaattcaatcaatcaaaagaatccataagggagaagtgcaaaatcaatctaaagaatcaaaagggaagaagtgaaatcaatctgaagaatta 11335116  T
Q  240 aaagaggagaaatgcagggcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagca 339  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11335117 aaagaggagaagtgcagggcaatcaatcagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagca 11335216  T
Q  340 atcaatcaggagaa 353  Q
    ||||||||||||||    
T  11335217 atcaatcaggagaa 11335230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 11335137 - 11335269
Alignment:
Q  222 aatcaatcagaagaattaaaag---aggagaaatgcagggcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatca 318  Q
    |||||||||||||||| | |||   ||||||| ||||  ||||||||| |||||||||| |||| |||   |||||||| |||||||||||| |||||||    
T  11335137 aatcaatcagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgag---aagtgcaaagcaatcaatcaggagaatca 11335233  T
Q  319 a-aaggtgagaagtgcaaagcaatcaatcaggagaa 353  Q
    | |||  ||||||||||||||||||||| |||||||    
T  11335234 ataagaggagaagtgcaaagcaatcaataaggagaa 11335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11320767 - 11320811
Alignment:
Q  1 tcaccatcaaccactcaaagagagaaccatctaaacataagaacc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11320767 tcaccatcaaccactcaaagagagaaccatctaaacataagaacc 11320811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 11335202 - 11335344
Alignment:
Q  140 gagaagtgcaattcaatcaatcataagaatccataag-ggagaagtgcaaa---atcaatctaaagaatcaaaagg-gaagaagtgaaatcaatcagaag 234  Q
    |||||||||||  ||||||||||  |||||| ||||| |||||||||||||   ||||||    |||||||| ||| | ||||||||||||||||| |||    
T  11335202 gagaagtgcaaagcaatcaatcaggagaatcaataagaggagaagtgcaaagcaatcaataaggagaatcaataggaggagaagtgaaatcaatcaaaag 11335301  T
Q  235 aattaaaagaggagaaatgcagggcaatcaattagaagaatca 277  Q
    ||| ||||| |||||| ||||  ||||||||| ||||||||||    
T  11335302 aatgaaaaggggagaagtgcaatgcaatcaatcagaagaatca 11335344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 9511952 - 9511886
Alignment:
Q  258 gcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcag-aagaatcaaaagg 323  Q
    ||||||||| |||||||||| |||||||  |||||||||||||||||||| || |||||||||||||    
T  9511952 gcaatcaatcagaagaatcaaaaggggatcagaagtgcaatgcaatcaattagaaagaatcaaaagg 9511886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 353
Target Start/End: Original strand, 11335121 - 11335341
Alignment:
Q  138 aggagaagtgcaattcaatcaatcataagaatccataaggg----agaagtgcaa---aatcaatctaaagaatcaaaagggaagaagtgaaa-----tc 225  Q
    ||||||||||||   |||||||||| ||||||| |||||||    ||||||||||   ||||||||  |||||||||||||  ||||||| ||     ||    
T  11335121 aggagaagtgcagggcaatcaatcagaagaatc-ataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatc 11335219  T
Q  226 aatcagaagaattaa-aagaggagaaatgcagggcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggt 324  Q
    |||||| ||||| || |||||||||| ||||  ||||||||| || |||||||  |||  |||||||||| |||     |||||| |||||| ||||||     
T  11335220 aatcaggagaatcaataagaggagaagtgcaaagcaatcaataaggagaatcaatagg--aggagaagtgaaat-----caatcaaaagaatgaaaaggg 11335312  T
Q  325 gagaagtgcaaagcaatcaatcaggagaa 353  Q
    ||||||||||| |||||||||||| ||||    
T  11335313 gagaagtgcaatgcaatcaatcagaagaa 11335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 11335312 - 11335345
Alignment:
Q  286 ggagaagtgcaatgcaatcaatcagaagaatcaa 319  Q
    ||||||||||||||||||||||||||||||||||    
T  11335312 ggagaagtgcaatgcaatcaatcagaagaatcaa 11335345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 11335312 - 11335384
Alignment:
Q  139 ggagaagtgcaattcaatcaatcataagaatccata-agggagaagtgcaaaatcaatctaaagaatcaaaaggg 212  Q
    ||||||||||||| |||||||||| ||||||| |||  ||||||||||   |||||||| |||||||||||||||    
T  11335312 ggagaagtgcaatgcaatcaatcagaagaatcaatagggggagaagtg--taatcaatcaaaagaatcaaaaggg 11335384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 9511953 - 9511903
Alignment:
Q  298 tgcaatcaatcagaagaatcaaaagg---tgagaagtgcaaagcaatcaat 345  Q
    ||||||||||||||||||||||||||   | |||||||||| |||||||||    
T  9511953 tgcaatcaatcagaagaatcaaaaggggatcagaagtgcaatgcaatcaat 9511903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 26403303 - 26403200
Alignment:
Q  3 accatcaaccactcaaagagagaaccatctaaacataagaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaac 102  Q
    ||||||||||| | ||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||  | | ||||||| ||||||||||||||||     
T  26403303 accatcaaccagttaaatagagaaccatctaaacagaagaaccaagtcaaaccaaaccaaacaaaagaattggtggagagaagcagccatacaaaagaat 26403204  T
Q  103 caat 106  Q
    ||||    
T  26403203 caat 26403200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 44338748 - 44338660
Alignment:
Q  123 acataaaaatcaataaggagaagtgcaattcaatcaatcataagaatccataa-gggagaagtgcaaaatcaatctaaagaatcaaaaggg 212  Q
    ||||||||| |||||  |||||||||||| |  ||||||| |||||||||||| |||| ||||||  |||||||| |||||||||||||||    
T  44338748 acataaaaaccaatagagagaagtgcaatgctctcaatcagaagaatccataaggggataagtgc--aatcaatcaaaagaatcaaaaggg 44338660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 26403197 - 26403160
Alignment:
Q  286 ggagaagtgcaatgcaatcaatcagaagaatcaaaagg 323  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26403197 ggagaagtgcaatgcaatcaatcaaaagaatcaaaagg 26403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 46963574 - 46963634
Alignment:
Q  269 gaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaag 330  Q
    ||||||||| |||||| ||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  46963574 gaagaatcaaaagggg-ggagaagtgcaatgcaatcaatcggaagaaccaataggggagaag 46963634  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 46963714 - 46963790
Alignment:
Q  258 gcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 335  Q
    ||||||||| |||||||||| |||  | |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  46963714 gcaatcaatcagaagaatcaaaagatg-ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 46963790  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 3889238 - 3889163
Alignment:
Q  25 aaccatctaaacataagaac-----ccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccataca 95  Q
    ||||||| ||||||||||||     |||| ||||||||||||||||||||||||| ||| ||||| || |||||||    
T  3889238 aaccatccaaacataagaactaagtccaaccaaaccaaaccaaacaaaagaaccggtagggagaagcaaccataca 3889163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 10236822 - 10236744
Alignment:
Q  28 catctaaacataagaacccaatcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 106  Q
    |||| ||||| ||||||| | |||||| || |||||||||||||||| ||| ||||| || ||||| | ||||||||||    
T  10236822 catccaaacaaaagaaccaagtcaaacaaatccaaacaaaagaaccgctagggagaagcaaccatatagaagaaccaat 10236744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 26403228 - 26403166
Alignment:
Q  108 gagaggagcaaccaaacataaaaatcaataaggagaagtgcaattcaatcaatcataagaatc 170  Q
    ||||| |||| ||| ||| || |||||||| ||||||||||||| |||||||||| |||||||    
T  26403228 gagagaagcagccatacaaaagaatcaatagggagaagtgcaatgcaatcaatcaaaagaatc 26403166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 346
Target Start/End: Original strand, 46963631 - 46963763
Alignment:
Q  212 gaagaagtgaaatcaatcagaagaattaaaagag--gagaaatgcagggcaat-caattagaagaatcataaggggaggagaagtgcaatgcaatcaatc 308  Q
    ||||||||| |||||||||||||||| |||||||  ||||| ||||  ||||| |||| ||||||| ||  |||||  |||||     ||||||||||||    
T  46963631 gaagaagtgcaatcaatcagaagaatcaaaagagtggagaagtgcaatgcaatgcaatcagaagaaccaatagggg--gagaa-----atgcaatcaatc 46963723  T
Q  309 agaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 346  Q
    ||||||||||||||  | ||||||| ||| ||||||||||    
T  46963724 agaagaatcaaaagatgggagaagtacaatgcaatcaatc 46963763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 21813991 - 21813928
Alignment:
Q  259 caatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaagg 323  Q
    |||| ||| |||||||||| || ||||| |||||||||||| |||||  ||||||||||||||||    
T  21813991 caatgaatcagaagaatcaaaaagggag-agaagtgcaatggaatcacacagaagaatcaaaagg 21813928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 323
Target Start/End: Original strand, 38583931 - 38584060
Alignment:
Q  189 aatcaatctaaagaatcaaaagggaagaagtgaaatcaatcagaagaattaaaagag-gagaaatgcagggcaatcaattagaagaatcataaggggagg 287  Q
    ||||||||  |||||||||| ||| ||||||| |||||||||||||||| ||||| | ||||||||||  ||||||    |||||||||| |||||  ||    
T  38583931 aatcaatcagaagaatcaaagggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatc----agaagaatcaaaaggg--gg 38584024  T
Q  288 agaagtgcaatgcaatcaatcagaagaatcaaaagg 323  Q
    |||||||||||||||||| |||||| ||||||||||    
T  38584025 agaagtgcaatgcaatcactcagaaaaatcaaaagg 38584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 303
Target Start/End: Original strand, 38583910 - 38584079
Alignment:
Q  133 caataaggagaagtgcaattcaatcaatcataagaatccataagggagaagtgcaaaatcaatctaaagaatcaaaaggg-aagaagtgaaat-caatca 230  Q
    |||||| |||||||||||| |||||||||| ||||||| |   |||||||||||  ||||||||  ||||||||||||||  |||| || ||| ||||||    
T  38583910 caataaagagaagtgcaatacaatcaatcagaagaatcaaagggggagaagtgc--aatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatca 38584007  T
Q  231 gaagaattaaaa-gaggagaaatgcagggcaatcaattagaagaatcataaggggaggagaagtgcaatgcaat 303  Q
    ||||||| |||| | |||||| ||||  ||||||| | |||| ||||| |||||  |||||||||| |||||||    
T  38584008 gaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaaggg--ggagaagtgcgatgcaat 38584079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 29409358 - 29409407
Alignment:
Q  286 ggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 335  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  29409358 ggagaagtgcaatgcaatcaatcagaagaatcaacaggggagacgtgcaa 29409407  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 8986534 - 8986463
Alignment:
Q  263 caattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 335  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||| |||||| ||| |||  ||||||||||    
T  8986534 caatcagaagaatcaaaagggg-ggagaagtgcaatgcaatcaatcggaagaaccaatagggtagaagtgcaa 8986463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 29409336 - 29409429
Alignment:
Q  117 aaccaaacataaaaatcaataaggagaagtgcaattcaatcaatcataagaatccataagggagaagtgcaaaatcaatctaaagaatcaaaaggg 212  Q
    ||||||||| || |||||||| ||||||||||||| |||||||||| ||||||| | | |||||| ||||  ||||||||  ||||||||| ||||    
T  29409336 aaccaaacagaagaatcaatagggagaagtgcaatgcaatcaatcagaagaatcaacaggggagacgtgc--aatcaatcagaagaatcaataggg 29409429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 38583917 - 38583965
Alignment:
Q  287 gagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 335  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||||    
T  38583917 gagaagtgcaatacaatcaatcagaagaatcaaagggggagaagtgcaa 38583965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 1173120 - 1173178
Alignment:
Q  63 acaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagaggagcaaccaaa 123  Q
    |||||||||| | ||||||||| ||| |||||||||||||||||  |||||||||||||||    
T  1173120 acaaaagaacaggtagagagaagcagtcatacaaaagaaccaat--agaggagcaaccaaa 1173178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 8986391 - 8986315
Alignment:
Q  258 gcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 335  Q
    ||||||||| |||||||||| |||  | |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  8986391 gcaatcaatcagaagaatcaaaagatg-ggagaagtacaatgcaatcaatcggaagaaccaataggggagaagtgcaa 8986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 346
Target Start/End: Complemental strand, 8986513 - 8986342
Alignment:
Q  176 gggagaagtgcaa---aatcaatctaaagaatcaaaagggaagaagtgaaatcaatcagaagaattaaaagag--gagaaatgcagggcaat-caattag 269  Q
    |||||||||||||   ||||||||  ||||| ||| |||| ||||||| |||||||| ||||||| |||||||  ||||| ||||  ||||| |||| ||    
T  8986513 gggagaagtgcaatgcaatcaatcggaagaaccaatagggtagaagtgcaatcaatcggaagaatcaaaagagtggagaagtgcaatgcaatgcaatcag 8986414  T
Q  270 aagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 346  Q
    ||||| ||  |||||  |||||     ||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  8986413 aagaaccaatagggg--gagaa-----atgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 8986342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32290916 - 32290876
Alignment:
Q  5 catcaaccactcaaagagagaaccatctaaacataagaacc 45  Q
    ||||||||| ||||||||||||||||| ||||| |||||||    
T  32290916 catcaaccaatcaaagagagaaccatccaaacaaaagaacc 32290876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 335
Target Start/End: Complemental strand, 16871189 - 16870994
Alignment:
Q  140 gagaagtgcaattcaatcaatcataagaatccataa---gggagaagtgcaaaatcaatctaaagaatcaaaag-ggaagaagtgaaat-caatcagaag 234  Q
    |||||||||||| |||||||||| | ||||| | ||   |||||||||||||  ||||||  ||||| |||||| || ||||||| ||| ||||||||||    
T  16871189 gagaagtgcaatgcaatcaatcagacgaatcaaaaaagggggagaagtgcaa--tcaatcagaagaaccaaaagtgggagaagtgcaatgcaatcagaag 16871092  T
Q  235 aattaaaagaggagaaatgcagggcaat-caattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgc 333  Q
    ||| ||||| || || |   || ||||| |||| |||||||||| |||||| ||||||||||||||||||||||| |||||| ||| ||| || ||||||    
T  16871091 aatcaaaaggggggaga---agtgcaatgcaatcagaagaatcaaaagggg-ggagaagtgcaatgcaatcaatcggaagaaccaataggggaaaagtgc 16870996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 16871216 - 16871155
Alignment:
Q  259 caatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaa 321  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  16871216 caatcaatcagaagaatcaaaaggggag-agaagtgcaatgcaatcaatcagacgaatcaaaa 16871155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 346
Target Start/End: Complemental strand, 16871147 - 16871021
Alignment:
Q  214 agaagtgaaatcaatcagaagaattaaaagagg-agaaatgcagggcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaa 312  Q
    ||||||| |||||||||||||||  ||||| || |||| ||||  |||||||    ||||||||| |||||| ||||||||||||||||    |||||||    
T  16871147 agaagtgcaatcaatcagaagaaccaaaagtgggagaagtgcaatgcaatca----gaagaatcaaaagggg-ggagaagtgcaatgca----atcagaa 16871057  T
Q  313 gaatcaaaa--ggtgagaagtgcaaagcaatcaatc 346  Q
    |||||||||  || ||||||||||| ||||||||||    
T  16871056 gaatcaaaaggggggagaagtgcaatgcaatcaatc 16871021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 16870922 - 16870846
Alignment:
Q  258 gcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaagtgcaa 335  Q
    ||||||||| |||||||||| |||  | |||||||| |||||||||||||| |||||| ||| ||| |||||||||||    
T  16870922 gcaatcaatcagaagaatcaaaagatg-ggagaagtacaatgcaatcaatcggaagaaccaacaggggagaagtgcaa 16870846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 16871255 - 16871166
Alignment:
Q  263 caattagaagaatcataaggggaggagaagtgcaatg---caatcaatcagaagaatcaaaa--ggtgagaagtgcaaagcaatcaatcag 348  Q
    |||| ||||||||||  ||||| |||||||||||||    ||||||||||||||||||||||  || ||||||||||| ||||||||||||    
T  16871255 caatcagaagaatcaagagggg-ggagaagtgcaatcaaacaatcaatcagaagaatcaaaaggggagagaagtgcaatgcaatcaatcag 16871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 7259241 - 7259292
Alignment:
Q  54 ccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaat 106  Q
    |||||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  7259241 ccaaaccagacaaaagaaccgatag-gagaaacaaccatacataagaaccaat 7259292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 16870925 - 16870873
Alignment:
Q  296 aatgcaatcaatcagaagaatcaaaag--gtgagaagtgcaaagcaatcaatc 346  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||||||    
T  16870925 aatgcaatcaatcagaagaatcaaaagatgggagaagtacaatgcaatcaatc 16870873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 16871215 - 16871096
Alignment:
Q  222 aatcaatcagaagaattaaaagag--gagaaatgcagggcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaa 319  Q
    |||||||||||||||| ||||| |  ||||| ||||  ||||||||| ||| |||||| ||  || |||||||     |||||||||||||||||| |||    
T  16871215 aatcaatcagaagaatcaaaaggggagagaagtgcaatgcaatcaatcagacgaatcaaaaaagggggagaag-----tgcaatcaatcagaagaaccaa 16871121  T
Q  320 aag-gtgagaagtgcaaagcaatca 343  Q
    ||| | ||||||||||| |||||||    
T  16871120 aagtgggagaagtgcaatgcaatca 16871096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 32041708 - 32041645
Alignment:
Q  49 tcaaaccaaaccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 112  Q
    |||||| ||||||||||||||||||| ||||||||| || |||||||||||||| ||| |||||    
T  32041708 tcaaactaaaccaaacaaaagaaccggtagagagaatcaaccatacaaaagaacaaatagagag 32041645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 20242425 - 20242337
Alignment:
Q  123 acataaaaatcaataaggagaagtgcaattcaatcaatcataagaatccataa-gggagaagtgcaaaatcaatctaaagaatcaaaaggg 212  Q
    ||||||||| |||||  |||||||||||| |  ||||||| |||||||||||| |||| ||||||  |||||||| |||||||||||||||    
T  20242425 acataaaaaccaatagagagaagtgcaatgctctcaatcagaagaatccataaggggataagtgc--aatcaatcaaaagaatcaaaaggg 20242337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 20250735 - 20250823
Alignment:
Q  123 acataaaaatcaataaggagaagtgcaattcaatcaatcataagaatccataa-gggagaagtgcaaaatcaatctaaagaatcaaaaggg 212  Q
    ||||||||| |||||  |||||||||||| |  ||||||| |||||||||||| |||| ||||||  |||||||| |||||||||||||||    
T  20250735 acataaaaaccaatagagagaagtgcaatgctctcaatcagaagaatccataaggggataagtgc--aatcaatcaaaagaatcaaaaggg 20250823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 321
Target Start/End: Complemental strand, 22860918 - 22860737
Alignment:
Q  139 ggagaagtgcaattcaatcaatcataagaatccataaggg-agaagtgcaaaatcaatctaaagaatcaaaa--ggga-agaagtgaaatcaatcagaag 234  Q
    ||||||||||||| |||||||||| ||||||| ||| ||| ||||||||||    ||||  |||||||||||  |||| ||||||| |||||||||||||    
T  22860918 ggagaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaatgg-aatcagaagaatcaaaaaggggagagaagtgcaatcaatcagaag 22860820  T
Q  235 aattaaaagaggagaaatgcagggcaat-caattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaa 321  Q
    ||  ||||| || || |   || ||||| |||| |||||||||| |||||   |||||||||||||||||||| ||||||||||||||    
T  22860819 aaccaaaaggggggaga---agtgcaatgcaatcagaagaatcaaaaggga--gagaagtgcaatgcaatcaaacagaagaatcaaaa 22860737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 353
Target Start/End: Complemental strand, 22860919 - 22860743
Alignment:
Q  176 gggagaagtgcaa---aatcaatctaaagaatcaaaaggga-agaagtgaaatc-aatcagaagaattaaaagaggagaaatgcagggcaatcaattaga 270  Q
    |||||||||||||   |||||||| |||||||||| ||||  ||||||| |||  |||||||||||| |||| ||| || | | || ||||||||| |||    
T  22860919 gggagaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaatggaatcagaagaatcaaaa-aggggaga-gaagtgcaatcaatcaga 22860822  T
Q  271 agaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaa-ggtgagaagtgcaaagcaatcaatcaggagaa 353  Q
    |||| || |||||| ||||||||||||||||||||    |||||||||||| || ||||||||||| |||||||| ||| ||||    
T  22860821 agaaccaaaagggg-ggagaagtgcaatgcaatca----gaagaatcaaaagggagagaagtgcaatgcaatcaaacagaagaa 22860743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 22860946 - 22860895
Alignment:
Q  296 aatgcaatcaatcagaagaatcaaaaggtgagaagtgcaaagcaatcaatca 347  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  22860946 aatgcaatcaatcggaagaaccaaaaggggagaagtgcaatgcaatcaatca 22860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 18981407 - 18981357
Alignment:
Q  298 tgcaatcaatcagaagaatcaaaaggtg-agaagtgcaaagcaatcaatca 347  Q
    |||||||||||||||||||||||||| | | |||||||| |||||||||||    
T  18981407 tgcaatcaatcagaagaatcaaaaggagaaaaagtgcaatgcaatcaatca 18981357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 18984262 - 18984209
Alignment:
Q  59 ccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 112  Q
    |||||||||||||||| |||||| ||  ||||||||| |||||||||| |||||    
T  18984262 ccaaacaaaagaaccggtagagataactagccatacacaagaaccaatagagag 18984209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 18984211 - 18984142
Alignment:
Q  140 gagaagtgcaattcaatcaatcataagaatccataa-gggagaagtgcaaaatcaatctaaagaatcaaaag 210  Q
    |||||||||||| | |||||||| || ||||||||| |||||||||||  ||||||||  ||||||||||||    
T  18984211 gagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgc--aatcaatcagaagaatcaaaag 18984142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 243
Target Start/End: Original strand, 9168107 - 9168258
Alignment:
Q  93 acaaaagaaccaattgagaggagcaaccaaacataaaaatcaataaggagaagtgcaattcaatcaatcataagaatccat-aagggagaagtgcaaaat 191  Q
    |||||||||||| | ||||| || | ||| |||||| |||||||| | ||||||||||| | |||||| | |||||||||| |||||||||||||  |||    
T  9168107 acaaaagaaccagtagagagaagtagccatacataagaatcaataggtagaagtgcaatgctatcaattagaagaatccataaagggagaagtgc--aat 9168204  T
Q  192 caatctaaagaatcaaaagg-gaagaagtgaaat-caatcagaagaattaaaag 243  Q
    | |||  ||||||||||||| | ||||||| ||| |||| |||||||| |||||    
T  9168205 cgatcagaagaatcaaaaggaggagaagtgcaatgcaataagaagaatgaaaag 9168258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 42530868 - 42530806
Alignment:
Q  189 aatcaatctaaagaatcaaaaggg-aagaagtgaaatcaatcagaagaattaaaagaggagaa 250  Q
    ||||||||  |||||||||||||| |||||||| |||||||||||||||| ||||| ||||||    
T  42530868 aatcaatcagaagaatcaaaaggggaagaagtgcaatcaatcagaagaatcaaaaggggagaa 42530806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 42530913 - 42530833
Alignment:
Q  258 gcaatcaattagaagaatcataag-gggaggag-aagtgcaatgcaatcaatcagaagaatcaaaaggtg-agaagtgcaa 335  Q
    ||||||||| ||||||| || ||| ||||| || ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  42530913 gcaatcaatcagaagaaccaaaagagggagaagtaagtgaaatgcaatcaatcagaagaatcaaaaggggaagaagtgcaa 42530833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 50295757 - 50295679
Alignment:
Q  259 caatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaa--ggtgagaagtgcaa 335  Q
    |||||||| || ||||| | |||||| |||||||||||||||||  |||||||| ||||||||  || |||||||||||    
T  50295757 caatcaatcagcagaattaaaagggggggagaagtgcaatgcaaaaaatcagaataatcaaaaagggggagaagtgcaa 50295679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 50295907 - 50295873
Alignment:
Q  286 ggagaagtgcaatgcaatcaatcagaagaatcaaa 320  Q
    |||||||||||||||||||||||| ||||||||||    
T  50295907 ggagaagtgcaatgcaatcaatcaaaagaatcaaa 50295873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 42530870 - 42530805
Alignment:
Q  258 gcaatcaattagaagaatcataaggggaggagaagtgcaatgcaatcaatcagaagaatcaaaaggtgagaag 330  Q
    ||||||||| |||||||||| |||||||  |||||||||||     |||||||||||||||||||| ||||||    
T  42530870 gcaatcaatcagaagaatcaaaagggga--agaagtgcaat-----caatcagaagaatcaaaaggggagaag 42530805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 50295928 - 50295884
Alignment:
Q  304 caatcagaagaatcaaaag-gtgagaagtgcaaagcaatcaatca 347  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||    
T  50295928 caatcagaagaatcaaaagagggagaagtgcaatgcaatcaatca 50295884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 14629 - 14682
Alignment:
Q  59 ccaaacaaaagaaccgatagagagaaacagccatacaaaagaaccaattgagag 112  Q
    |||||||||||||||| |||||| ||  ||||||||| |||||||||| |||||    
T  14629 ccaaacaaaagaaccggtagagataactagccatacataagaaccaatagagag 14682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 14663 - 14749
Alignment:
Q  123 acataaaaatcaataaggagaagtgcaattcaatcaatcataagaatccataa-gggagaagtgcaaaatcaatctaaagaatcaaaag 210  Q
    |||||| || |||||  |||||||||||| | |||||||| || ||||||||| |||||||||||  ||||||||  ||||||||||||    
T  14663 acataagaaccaatagagagaagtgcaatgctatcaatcagaaaaatccataaggggagaagtgc--aatcaatcagaagaatcaaaag 14749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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