View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_177 (Length: 353)
Name: NF8981_low_177
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_177 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 35910328 - 35909981
Alignment:
| Q |
1 |
attatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910328 |
attatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaa |
35910229 |
T |
|
| Q |
101 |
ttcagatcaaactcatgagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaagccttcttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
35910228 |
ctcagatcaaactcatgagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttcttt |
35910129 |
T |
|
| Q |
201 |
gaacatggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910128 |
gaacatggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacc |
35910029 |
T |
|
| Q |
301 |
cttgttctgattactatggttctgcctatctaaatagaccacaggttc |
348 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
35910028 |
cttgttctgattattatggttctgcctatctaaatagaccagaggttc |
35909981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 35914763 - 35914419
Alignment:
| Q |
1 |
attatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| ||||| |
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|
| T |
35914763 |
attatctttacaataaaaaatttcagatagggaatgcttggattgatgatgccacaggtttaagggggttatttgattacctttggactcatgcgttgaa |
35914664 |
T |
|
| Q |
101 |
ttcagatcaaactcatgagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaagccttcttt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||||| |||| ||||| || |||||| || |
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|
| T |
35914663 |
ctcggatcaaactcatgagttgattgagaagtattgtgacttcacttctgaaaacgtttcatcaatttgtatc---aatgcaacacataaggccttcctt |
35914567 |
T |
|
| Q |
201 |
gaacatggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacc |
300 |
Q |
| |
|
|| || ||||||||||||| |||||||||||||||||| | ||||||||||| ||||| |||||||| |||||||||||||||| |||||| ||||||| |
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|
| T |
35914566 |
gagcaaggaaagatagactcctataacatctatgctccactatgtcatgactcttctctcaaaaatggctcaactggttatgtaactaatgactttgacc |
35914467 |
T |
|
| Q |
301 |
cttgttctgattactatggttctgcctatctaaatagaccacaggttc |
348 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| |||||| |
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|
| T |
35914466 |
cttgttctgattactatggtgctgcctatctaaatacaccagaggttc |
35914419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 348
Target Start/End: Complemental strand, 35934522 - 35934198
Alignment:
| Q |
21 |
tttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaattcagatcaaactcatgagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35934522 |
tttcagatagggaatgcttggattgatgatgctacaggtgacaaggggttatttgattacttctggactcatgctttgaactcagatcaaactcatgagt |
35934423 |
T |
|
| Q |
121 |
tgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaagccttctttgaacatggaaagatagactt |
220 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||| |||||| |||| | |||||||||||||| |
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|
| T |
35934422 |
tgattgagaagtactgtgacttcactaaacaaaattattcaacaatttgtatcaat---gtaacagattgggccttcattgagaaaggaaagatagactt |
35934326 |
T |
|
| Q |
221 |
atataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattactatggt |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
35934325 |
ctataacatctatgcgccattgtgtcatgactcttctctgaaaaatggttcaactggttatgtaactaatgattttgacccttgttctgataactatggt |
35934226 |
T |
|
| Q |
321 |
tctgcctatctaaatagaccacaggttc |
348 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
35934225 |
attgcctatctaaatagaccagaggttc |
35934198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 35927728 - 35927372
Alignment:
| Q |
1 |
attatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
35927728 |
attatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttgaaggggttatttgattacttttggactcatgctttgaa |
35927629 |
T |
|
| Q |
101 |
ttcagatcaaactcatgagttgattgagaagtactgtgact------------tcactactgaaaatgtttcagcaatttgtatcaataatgtaacacta |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||||| || ||| ||||||||| |
|
|
| T |
35927628 |
ttcagatcaaactcatgagttgattgagaagtactgtgacttcactgttgacttcactagtggaaatacttcagcaatatg---caacaatgtaacagat |
35927532 |
T |
|
| Q |
189 |
aaagccttctttgaacatggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagta |
288 |
Q |
| |
|
| || | | ||| | ||||||||||| || ||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
35927531 |
agggcttacactgagaaaggaaagatagatttctataacatctacgctccattgtgtcacgactcttctttgaaaaatggttcaactggttatgtaagta |
35927432 |
T |
|
| Q |
289 |
atgattttgacccttgttctgattactatggttctgcctatctaaatagaccacaggttc |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |
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|
| T |
35927431 |
atgattttgacccttgttctgattactatggcattgcctatttaaatagaccagaggttc |
35927372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 35921135 - 35920795
Alignment:
| Q |
1 |
attatctttactttaaaaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaa |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| | | |||| || | |||||||||||||| || |
|
|
| T |
35921135 |
attatctatacttaaaaaaatttcagatagggaatgcttggattgatgatgcgacgaatttaaaggggatatatgataacttgtggactcatgctttaaa |
35921036 |
T |
|
| Q |
101 |
ttcagatcaaactcatgagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaagccttcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||| || |||||| || |
|
|
| T |
35921035 |
ctcagatcaaactcatgagttgattgagaagtactgtgacttcactaaagaaaatgtttcagcaatttgt---aacaatgcaactgataaggccttcgtt |
35920939 |
T |
|
| Q |
201 |
ga-acatggaaagatagacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttc---aactggttatgtaagtaatgatttt |
296 |
Q |
| |
|
|| ||| |||||||||||| | ||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
35920938 |
gagaca-ggaaagatagacatctataacatccatgcgccattgtgtcatgactcttctctgaaaaatggttctagtactggttacgtaagcaatgatttt |
35920840 |
T |
|
| Q |
297 |
gacccttgttctgattactatggttctgcctatctaaatagacca |
341 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
35920839 |
gacccttgttctgattactatgttactgcctatctaaatagacca |
35920795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 35940092 - 35939766
Alignment:
| Q |
17 |
aaaatttcagatagggaatgcttggattgatgatgccacaagtttaaaggggttttttgattacctttggactcatgctttgaattcagatcaaactcat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||| || | ||||||||||||||||| || |||||||||||| |
|
|
| T |
35940092 |
aaaatttcagttagggaatgcttggattgatgatgctacaagtttaaaggggttatatgataacttgtggactcatgctttgaactcggatcaaactcat |
35939993 |
T |
|
| Q |
117 |
gagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaat--aatgtaacactaaaagccttctttgaacatggaaagat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||| | | || | |||| | |||||||| |
|
|
| T |
35939992 |
gagttgattgagaagtactgtgacttcactaaacaaaattattcagcaatttgtaccaatgcaatgaa-----tatgtccatgattgagaaaggaaagat |
35939898 |
T |
|
| Q |
215 |
agacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggttatgtaagtaatgattttgacccttgttctgattac |
314 |
Q |
| |
|
||||| | |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
35939897 |
agactcctttaacatctatgctccattatgtcacgactctactctgaaaaatggttcaactggttatgtaagtaatgatcttgacccttgttctgattac |
35939798 |
T |
|
| Q |
315 |
tatggttctgcctatctaaatagaccacaggt |
346 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |
|
|
| T |
35939797 |
tatggcactgcctatctaaatagaccagaggt |
35939766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 116 - 280
Target Start/End: Original strand, 21285096 - 21285260
Alignment:
| Q |
116 |
tgagttgattgagaagtactgtgacttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaagccttctttgaacatggaaagata |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
21285096 |
tgagttgattgagaagtactgtggcttcactactgaaaatgtttcagcaatttgtatcaataatgtaacactaaaggccttgtttgaacatggaaagata |
21285195 |
T |
|
| Q |
216 |
gacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggtta |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21285196 |
gacttatataacatctatgctccattgtgtcatgactcctctctgaaaaatggttcaactggtta |
21285260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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