View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_182 (Length: 344)

Name: NF8981_low_182
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_182
NF8981_low_182
[»] chr7 (6 HSPs)
chr7 (76-326)||(47368932-47369182)
chr7 (202-250)||(39463533-39463581)
chr7 (202-285)||(39457968-39458051)
chr7 (202-250)||(39437220-39437268)
chr7 (144-251)||(39424139-39424246)
chr7 (196-250)||(19981488-19981542)
[»] chr3 (4 HSPs)
chr3 (127-226)||(48445095-48445194)
chr3 (164-272)||(7176142-7176250)
chr3 (179-248)||(37418296-37418365)
chr3 (147-247)||(27816266-27816366)
[»] chr1 (1 HSPs)
chr1 (148-298)||(43098349-43098499)
[»] chr4 (1 HSPs)
chr4 (137-249)||(38490517-38490629)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 47369182 - 47368932
Alignment:
Q  76 ccctaatagacgcgtataacccaaccattagagaagatgaattcttcttcctggcgatccattcccacggtagatagaatcagcgatatgcctgattcga 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47369182 ccctaatagacgcgtataacccaaccattagagaagatgaattcttcttcctggcgatccattcccacggtagatagaatcagcgacatgcctgattcga 47369083  T
Q  176 tactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaactggtttggatcgcagttcttgctct 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47369082 tactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaactggtttggatcgcagttgttgctct 47368983  T
Q  276 ctactttgaccaggaaaccttcaacagctttgcaagcttccgcgattttgt 326  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47368982 ctactttgaccaggaaaccttcaacagctttgcaagcttccgcaattttgt 47368932  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 39463581 - 39463533
Alignment:
Q  202 ccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaac 250  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  39463581 ccaaccaaacttgctgcaacgacaagcgttctctcaaagagatggaaac 39463533  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 39458051 - 39457968
Alignment:
Q  202 ccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaactggtttggatcgcagttcttgctctctactttgac 285  Q
    ||||||||| | | || |||||||||||| |||||||||||||||||||  || ||| || ||||||| |||||| ||||||||    
T  39458051 ccaaccaaacttgttgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctctcgactttgac 39457968  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 39437220 - 39437268
Alignment:
Q  202 ccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaac 250  Q
    ||||||||| | |||||||||||||| || |||||||||||||||||||    
T  39437220 ccaaccaaacttgctgcaaccacaagtgtcctctcaaagagatggaaac 39437268  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 39424139 - 39424246
Alignment:
Q  144 ggtagatagaatcagcgatatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagaga 243  Q
    ||||||||| || |||||  |||| ||||| || || ||||| || ||||  ||||  ||||||||| | |||||||||||||| || |||||||| |||    
T  39424139 ggtagataggataagcgacctgccggattcaattctgtgtcacatactctattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaaaaga 39424238  T
Q  244 tggaaact 251  Q
    ||||||||    
T  39424239 tggaaact 39424246  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 19981542 - 19981488
Alignment:
Q  196 tttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaac 250  Q
    |||| |||||||||| ||||||| | | ||||||| |||||||||||||||||||    
T  19981542 tttctcccaaccaaactcgctgcgatcccaagcgtcctctcaaagagatggaaac 19981488  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 48445095 - 48445194
Alignment:
Q  127 tggcgatccattcccacggtagatagaatcagcgatatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaa 226  Q
    |||||||| ||||||||||| |||||||| ||||| ||||| ||||| |||||| ||||||||||||| |||| |||||||||| | |||| ||||||||    
T  48445095 tggcgatcaattcccacggttgatagaattagcgacatgccggattcaatactcagtcatattctctcttttctcccaaccaaacttgctgtaaccacaa 48445194  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 7176250 - 7176142
Alignment:
Q  164 tgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaaactggtttggatcgc 263  Q
    |||| ||||| ||||| ||||| |||||||||||||  || || ||| | ||||||||||||||||| ||||||||||||||||||  ||| |||||| |    
T  7176250 tgccagattccatactttgtcacattctctcctttcttccgactaaactagctgcaaccacaagcgtcctctcaaagagatggaaatcggtgtggatctc 7176151  T
Q  264 agttcttgc 272  Q
    ||| |||||    
T  7176150 agtccttgc 7176142  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 37418296 - 37418365
Alignment:
Q  179 tctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatggaa 248  Q
    ||||||||||||||||||||| ||||||||||  | |||   |||||||| | ||||||||||| |||||    
T  37418296 tctgtcatattctctcctttctcccaaccaaagacactgtcgccacaagcatcctctcaaagaggtggaa 37418365  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 27816366 - 27816266
Alignment:
Q  147 agatagaatcagcgatatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatgg 246  Q
    ||||||||| |||||  | |||||||| |||||| |||| || ||||| ||    ||||||||| || |||| ||||||||| | |||||||||||||||    
T  27816366 agatagaattagcgagttacctgattcaatactcagtcacatcctctctttaattccaaccaaactcactgcgaccacaagcatcctctcaaagagatgg 27816267  T
Q  247 a 247  Q
    |    
T  27816266 a 27816266  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 43098349 - 43098499
Alignment:
Q  148 gatagaatcagcgatatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagagatgga 247  Q
    |||||||| ||| || |||| ||||| || || ||||| |||||||| ||   |||||||||| | || |||| ||||||||| |||||||| ||||||     
T  43098349 gatagaattagctatttgccagattcaattctgtgtcacattctctctttcgtcccaaccaaacttgcggcaatcacaagcgtcctctcaaaaagatggg 43098448  T
Q  248 aactggtttggatcgcagttcttgctctctactttgaccaggaaaccttca 298  Q
    ||| ||| ||| || ||||||||||||||||||||||||| ||| ||||||    
T  43098449 aacaggtatggctctcagttcttgctctctactttgaccaagaagccttca 43098499  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 38490629 - 38490517
Alignment:
Q  137 ttcccacggtagatagaatcagcgatatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctc 236  Q
    ||||||| | ||||||||| |||||  |||||||||||||||||||||| |||||||| |||| |||||||||  | |||   | ||||||| | |||||    
T  38490629 ttcccactgcagatagaattagcgacttgcctgattcgatactctgtcacattctctcttttctcccaaccaatcttgctttcatcacaagcttcctctc 38490530  T
Q  237 aaagagatggaaa 249  Q
    |||||||||||||    
T  38490529 aaagagatggaaa 38490517  T

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