View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_183 (Length: 343)
Name: NF8981_low_183
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_183 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 3896743 - 3897053
Alignment:
| Q |
18 |
attttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896743 |
attttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
3896842 |
T |
|
| Q |
118 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896843 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
3896942 |
T |
|
| Q |
218 |
tgataagaataggcctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtgttcgtgcttca |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3896943 |
tgataagaataggtctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtatccgtgcttca |
3897042 |
T |
|
| Q |
318 |
tagaaaacatt |
328 |
Q |
| |
|
||||||||||| |
|
|
| T |
3897043 |
tagaaaacatt |
3897053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 46285180 - 46285038
Alignment:
| Q |
30 |
catcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg---agctcattacgtgc |
126 |
Q |
| |
|
||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || || ||| | ||| |
|
|
| T |
46285180 |
catcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtccagttcagcaattgc |
46285081 |
T |
|
| Q |
127 |
ttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
169 |
Q |
| |
|
||| || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
46285080 |
ttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 4397 - 4709
Alignment:
| Q |
18 |
attttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4397 |
attttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
4496 |
T |
|
| Q |
118 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4497 |
attacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaacatgaacagaaaagagagacacataaagcatt |
4596 |
T |
|
| Q |
218 |
tgataagaataggcctttgttcattcaccgacacatataattacatgc--aatattattaattttctcaaactattatcattgttgacgtgttcgtgctt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4597 |
tgataagaataggcctttgttcattcacctacacatataattacatgcttaatattattaattttctcaaactattatcattgttgacgtatccgtgctt |
4696 |
T |
|
| Q |
316 |
catagaaaacatt |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4697 |
catagaaaacatt |
4709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University