View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_187 (Length: 332)
Name: NF8981_low_187
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_187 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 33615801 - 33616097
Alignment:
| Q |
19 |
actctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcaggnnnnnnncttcttctgcgtttattc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33615801 |
actctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcaggttttttttttcttctgcgtttattc |
33615900 |
T |
|
| Q |
119 |
cataaatttttcagtctatctatcaaatttaaaagattatttatatctaatttcacannnnnnnnnncttttcaatttattaaatttcaggaggtgttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33615901 |
cataaatttttcagtctatctatcaaatttaaaagattatttatatctaatttcacatattttttt--ttttcaatttattaaatttcaggaggtgttac |
33615998 |
T |
|
| Q |
219 |
aacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtatgatagtcaaatatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33615999 |
aacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtatgatagtcaaatatt |
33616097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 313
Target Start/End: Original strand, 33608199 - 33608309
Alignment:
| Q |
203 |
tttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgta |
302 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| || |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
33608199 |
tttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgta |
33608298 |
T |
|
| Q |
303 |
tgatagtcaaa |
313 |
Q |
| |
|
||||||||||| |
|
|
| T |
33608299 |
tgatagtcaaa |
33608309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 33587423 - 33587530
Alignment:
| Q |
204 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
|
|
| T |
33587423 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33587522 |
T |
|
| Q |
304 |
gatagtca |
311 |
Q |
| |
|
|| ||||| |
|
|
| T |
33587523 |
gacagtca |
33587530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 33594595 - 33594702
Alignment:
| Q |
204 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
|
|
| T |
33594595 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33594694 |
T |
|
| Q |
304 |
gatagtca |
311 |
Q |
| |
|
|| ||||| |
|
|
| T |
33594695 |
gacagtca |
33594702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 33601726 - 33601833
Alignment:
| Q |
204 |
ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || | ||||| |||||||| ||||||||| |
|
|
| T |
33601726 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33601825 |
T |
|
| Q |
304 |
gatagtca |
311 |
Q |
| |
|
|| ||||| |
|
|
| T |
33601826 |
gacagtca |
33601833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 33626477 - 33626594
Alignment:
| Q |
200 |
aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgt |
299 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||| |||||||||| ||||||||||| |||||||||| || | | ||||| ||||| ||||| |
|
|
| T |
33626477 |
aaatttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgt |
33626576 |
T |
|
| Q |
300 |
gtatgatagtcaaatatt |
317 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33626577 |
gtatgatagtcaaatatt |
33626594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 33626302 - 33626370
Alignment:
| Q |
25 |
aatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttcagg |
93 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
33626302 |
aatcatcattacctgcatagttgctgcttccagtggccttctttttggatatgacatcggaatttcagg |
33626370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 33621356 - 33621473
Alignment:
| Q |
200 |
aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgt |
299 |
Q |
| |
|
||||||||| |||||| || || ||| ||||||||| ||||||| || ||| ||||||| ||||| ||||| || | | ||||| ||||||||||| |
|
|
| T |
33621356 |
aaatttcagaaggtgtcaccaccatgaagccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgt |
33621455 |
T |
|
| Q |
300 |
gtatgatagtcaaatatt |
317 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33621456 |
gtatgatagtcaaatatt |
33621473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 33561955 - 33562006
Alignment:
| Q |
200 |
aaatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttcc |
251 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| || ||||||||||||| |
|
|
| T |
33561955 |
aaatttcaggaggtgttactacgatgatgccattccttgaaaaattctttcc |
33562006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 33608006 - 33608061
Alignment:
| Q |
23 |
tcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatga |
78 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||| |||| ||||||| ||||||||| |
|
|
| T |
33608006 |
tcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatga |
33608061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University