View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_196 (Length: 324)
Name: NF8981_low_196
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_196 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 43584841 - 43585156
Alignment:
| Q |
17 |
tgtgtagatgggtcgtggcatagcctttggacgctttgatgattctttcagtgtgagctccattagggcttatgttgctgagttcatctcaaccttgatc |
116 |
Q |
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| T |
43584841 |
tgtgtagatgggtcgtggcatagcctttggacgctttgatgattctttcagtgtgagctccattagggcttatgttgctgagttcatctcaaccttgatc |
43584940 |
T |
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| Q |
117 |
tttgtttttgctggtgttggttcagccatagcctatggttagttttttcttctttacaaatgaattaaaaccaaaatgactatgccacttctaaagtaat |
216 |
Q |
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| T |
43584941 |
tttgtttttgctggtgttggttcagccatagcctatggttagttttttcttctttacaaatgaattaaaaccaaaatgactatgccatttctaaagtaat |
43585040 |
T |
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| Q |
217 |
acattgtttttaccatgataagatatttcattgaagaaagtttgagttatggaaaccaaac--------actttgtacttttgcagctaagttgacatca |
308 |
Q |
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| T |
43585041 |
acattgtttttaccatgataagatatttcattgaagaaagtttgagttatggaaaccaaacacttaaaaactttgtacttttgcagctaagttgacatca |
43585140 |
T |
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| Q |
309 |
ggtgcagctcttgatc |
324 |
Q |
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| T |
43585141 |
ggtgcagctcttgatc |
43585156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 4190927 - 4190784
Alignment:
| Q |
32 |
tggcatagcctttggacgctttgatgattctttcagtgtgagctccattagggcttatgttgctgagttcatctcaaccttgatctttgtttttgctggt |
131 |
Q |
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| T |
4190927 |
tggcatagcatttggaaggcttgatgattcattcagttttggctcaattaaggcctatattgctgagttcatctcaacattgctctttgtttttgctggt |
4190828 |
T |
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| Q |
132 |
gttggttcagccatagcctatggttagttttttcttctttacaa |
175 |
Q |
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| T |
4190827 |
gttggttcagccatagcctatggttagttttctcttctttacaa |
4190784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 4190315 - 4190279
Alignment:
| Q |
288 |
tttgcagctaagttgacatcaggtgcagctcttgatc |
324 |
Q |
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| T |
4190315 |
tttgcaggtaagttgacatcagatgcagctcttgatc |
4190279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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