View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_199 (Length: 311)
Name: NF8981_low_199
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_199 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 50273387 - 50273107
Alignment:
| Q |
1 |
ccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50273387 |
ccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggct |
50273288 |
T |
|
| Q |
101 |
ccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctctactggaattcgttcctgaaaaacaacgttgtttcaatgttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50273287 |
ccttcgtctgaggttaaacctgctcttgaacatttcagttgctcgaacacttcctctactggaattcgttcctgaaaaacaacgctgtttcaatgttttg |
50273188 |
T |
|
| Q |
201 |
ttttggttgtcaaaatcatgaattcaagttgctacagaatcaaacaaacattttcacagaaattatttataatttttattt |
281 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50273187 |
ttttggttgtgaaaatcatgaattcaagttgctaaagaatcaaacaaacattttcacagaaattatttataatttttattt |
50273107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 1499342 - 1499514
Alignment:
| Q |
1 |
ccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggct |
100 |
Q |
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||||||||| |||||||||||||| || || ||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
1499342 |
ccatgataaaggattccacataaaacccaaaaacttcaaaaacttgctctcttttttctcttccaatttgtttggtccaaagacttgaagcctgttggct |
1499441 |
T |
|
| Q |
101 |
ccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctctactggaattcgttcct |
173 |
Q |
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| T |
1499442 |
ccttcttctgatgtcagaccttgtcttgaacattttagctgctcaaacacctcgtctattggaatccgttcct |
1499514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 1459401 - 1459229
Alignment:
| Q |
1 |
ccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggct |
100 |
Q |
| |
|
|||||| || || ||||||||||| ||||| ||||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||| ||||| |
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| T |
1459401 |
ccatgacaaagggttccacataaaacctaaaaacttcaaaaacttgttctcacttttctcttccagtttgtttggtccaaagacttgaagcctgctggct |
1459302 |
T |
|
| Q |
101 |
ccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctctactggaattcgttcct |
173 |
Q |
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| T |
1459301 |
ccttcctctgatgtcagaccttgtcttgaacattttagatgatcaaacacttcttctattggaacccgttcct |
1459229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 15866089 - 15865984
Alignment:
| Q |
68 |
ttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctctactggaattc |
167 |
Q |
| |
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|||||||||||||| | ||||| |||||| ||||||| |||| |||||| |||| | |||||||| |||||||||||||||||| | |||||||| |
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| T |
15866089 |
ttgtttggaccaaatatttgaatcctgttttctccttctgtggaggacaaaccttctctggtacatttcaactgctcgaacacttcctcgattggaattc |
15865990 |
T |
|
| Q |
168 |
gttcct |
173 |
Q |
| |
|
|||||| |
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|
| T |
15865989 |
gttcct |
15865984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 26787271 - 26787119
Alignment:
| Q |
1 |
ccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggct |
100 |
Q |
| |
|
||||||||| || ||||||||||| || || || |||||||||||| | || |||||||||| | |||||| | ||||| |||| |||||| | ||| |
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| T |
26787271 |
ccatgataaagggttccacataaaacccaaaaatttcaaaaacttgttctcagttttctcttcgagtttgttatgtccaaatacttcaagcctactcgct |
26787172 |
T |
|
| Q |
101 |
ccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttc |
153 |
Q |
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||||| || || || |||||| ||| ||||||||||| || ||||||||||| |
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| T |
26787171 |
ccttcctccgatgtcaaaccttgtctcgaacatttcagatgatcgaacacttc |
26787119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 3151626 - 3151585
Alignment:
| Q |
11 |
ggattccacataaatcctaagaacttcaaaaacttgctttcc |
52 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||| |
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| T |
3151626 |
ggattccacataaatcccaaaaacttcaaaaacttgctttcc |
3151585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 48439814 - 48439978
Alignment:
| Q |
1 |
ccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggct |
100 |
Q |
| |
|
|||||||| |||||||||||| || || ||||| || | ||||||||||| ||||||| || || ||||| |||||||| | ||| ||||| || || |
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| T |
48439814 |
ccatgatagtggattccacatgaaacccaagaatttaagtaacttgctttcagttttctcctctaacttgttaggaccaaatatttgtagcctattctct |
48439913 |
T |
|
| Q |
101 |
ccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctctactggaat |
165 |
Q |
| |
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|| || |||| |||||||| |||| | |||||| || |||| ||| |||||||| | |||||| |
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| T |
48439914 |
ccctcagctgatgttaaaccctctctagtacattttagttgcttgaagacttcctcaattggaat |
48439978 |
T |
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