View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_200 (Length: 311)
Name: NF8981_low_200
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_200 |
 |  |
|
Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 22440237 - 22440134
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||||||||||| | || ||| |||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22440237 |
aaatttagaaaatattcttcaaaaaattcaaatgttacaagtttcaatgcattgattacatatattttcataaaaacttactattaaaggtacttaaaga |
22440138 |
T |
 |
| Q |
147 |
gtgc |
150 |
Q |
| |
|
|||| |
|
|
| T |
22440137 |
gtgc |
22440134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 24792001 - 24792105
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatat-attttcataaaaacttactattaaaggtacttaaag |
145 |
Q |
| |
|
|||||||||||||||| | || |||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
24792001 |
aaatttagaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgattacatataatttttataaaaacttactattaatggttcttaaag |
24792100 |
T |
 |
| Q |
146 |
agtgc |
150 |
Q |
| |
|
||||| |
|
|
| T |
24792101 |
agtgc |
24792105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 2713533 - 2713420
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| |||| ||||||| ||||||||| | || |||||||||||||| ||||||||||||| |||||||| | |||||||| |||||||||||||||| |
|
|
| T |
2713533 |
tttaaagatcataaatttggaaaatattcttcaaaaaagtcaaatgttacaaattccaatgcaatgattatacagattttcatcaaaacttactattaaa |
2713434 |
T |
 |
| Q |
135 |
ggtacttaaagagt |
148 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
2713433 |
ggtgtttaaagagt |
2713420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 35022619 - 35022722
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||| ||||||||| | || |||||||||| ||||||||| ||||||||||||| | ||||||| |||||||||||| ||||| ||| |||||||| |
|
|
| T |
35022619 |
aaatttaaaaaatatttcttaaaaaagtcaaatattataaattttaatgcattgattacacatattttaataaaaacttacaattaatggtccttaaaga |
35022718 |
T |
 |
| Q |
147 |
gtgc |
150 |
Q |
| |
|
|||| |
|
|
| T |
35022719 |
gtgc |
35022722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 41073181 - 41073106
Alignment:
| Q |
74 |
tcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
41073181 |
tcaaatattataaatttcaatgcattgaatatatatattttcataaaaacttattattaaaggtctttaaagagtg |
41073106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 24762808 - 24762706
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||||||||||| | || |||||||||| ||| |||||||||| |||||||||| ||||||| |||||||||||||| || ||| |||||||| |
|
|
| T |
24762808 |
aaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattgattatacatatttttataaaaacttactagaaatggtccttaaaga |
24762709 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
24762708 |
gtg |
24762706 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 35443586 - 35443484
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||| ||||||||| | || |||||||||||||||||||| |||||| |||||| | | ||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
35443586 |
aaatttaaaaaatatttctcaaaaaagtcaaatgttataaattttaatgcactgattacacaaatttttgtaaaaacttacgattaaaagtacttaaaga |
35443487 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
35443486 |
gtg |
35443484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 815008 - 815104
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaa |
143 |
Q |
| |
|
||||||||||| ||||| | || ||| |||||||| | |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
815008 |
aaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaatgcattgattacaccgattttcataaaaacttacttttaaaggtgcttaa |
815104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 24765347 - 24765450
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||||||||||| | || ||| |||||| ||| |||||||||||||||||||| | ||||||| |||| ||||||||| || ||| |||||||| |
|
|
| T |
24765347 |
aaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttttataataacttactagaaatggtccttaaaga |
24765446 |
T |
 |
| Q |
147 |
gtgc |
150 |
Q |
| |
|
|||| |
|
|
| T |
24765447 |
gtgc |
24765450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 34234016 - 34233914
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||| ||||||| | || |||||||||| ||| ||||| |||||||||||||| | | |||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
34234016 |
aaatttagtaaatattactcaaaaaagtcaaatattacaaatttcaatgcattgattacacaaatttgaataaaaatttactattaaaggtgcttaaaga |
34233917 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
34233916 |
gtg |
34233914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 43791990 - 43791918
Alignment:
| Q |
65 |
taaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggt |
137 |
Q |
| |
|
|||| ||| |||||||||| |||||| |||||||| |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
43791990 |
taaaaaaaatcaaatgttacaaattctaatgcattaattatatagatttttataaaaacttattattaaaggt |
43791918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 20128365 - 20128444
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | |||||| ||||||| || |||||||| || |||||||||| |
|
|
| T |
20128365 |
aaagtcaaatgttacaaattccaatgcattgattacacgtatttttataaaaaatttctattaaaagtgtttaaagagtg |
20128444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 45522702 - 45522789
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||||||||| |||| |||||||||| || ||||| ||||| |||||||||||| |
|
|
| T |
45522702 |
aaatttaaaaaatatttcacaaaaaagttaaatgttataaatttcaatacattgattatgtagatttttctaaaatcttactattaaa |
45522789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 7271815 - 7271867
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaa |
122 |
Q |
| |
|
|||||||||| || | | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7271815 |
aaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaa |
7271867 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 20555550 - 20555491
Alignment:
| Q |
46 |
taaatttagaaaatatttat-aaataaagtcaaatgttataaattccaatgcattgatta |
104 |
Q |
| |
|
|||| ||| ||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
20555550 |
taaaattaaaaaatatttattaaaaaaagttaaatgttataaattccaatacattgatta |
20555491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 28453337 - 28453384
Alignment:
| Q |
97 |
attgattatatatattttcataaaaacttactattaaaggtacttaaa |
144 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| || |||||| |
|
|
| T |
28453337 |
attgattatacaaattttcataaaaacttactattaaaagtgcttaaa |
28453384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 15690265 - 15690187
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactt |
125 |
Q |
| |
|
||||| ||||||||||| | || ||| |||||| ||| ||||| ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
15690265 |
aaattaagaaaatatttctcaaaaaaatcaaatattacaaattttaatgcattgattacacatatttttataaaaactt |
15690187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 25753497 - 25753598
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| || ||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25753497 |
aaatttagaaaatattcttcaataaagtcaaatgttataagtttcaatgcattaattacataaattttcataaaaacttactattaaaggtgcttaaaga |
25753596 |
T |
 |
| Q |
147 |
gt |
148 |
Q |
| |
|
|| |
|
|
| T |
25753597 |
gt |
25753598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 48811474 - 48811361
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| |||| ||||||||||||||||| || || |||||| ||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
48811474 |
tttaaggatcctaaatttagaaaatattcattaaaaaagtctaatgttacaaatttcaatgcattgattacacaatttttcataaaaacttactattaaa |
48811375 |
T |
 |
| Q |
135 |
ggtacttaaagagt |
148 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
48811374 |
agtttttaaagagt |
48811361 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 45529213 - 45529112
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||||||||||| | || ||||||||| |||| || || || ||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
45529213 |
aaatttagaaaatattcttcaaaaaagtcaaacgttacaagtttcagtgcattgattacataaattttcataaaaacttactattaagggtgcttaaaga |
45529114 |
T |
 |
| Q |
147 |
gt |
148 |
Q |
| |
|
|| |
|
|
| T |
45529113 |
gt |
45529112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 38156609 - 38156511
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | || |||||||||||||| ||||| |||||||||||||| | ||||||| |||||| ||||||||||| |
|
|
| T |
38156609 |
tttaaggatcttaaatttagaaagtattttttaa-aaagtcaaatgttacaaatttcaatgcattgattacacatattttaataaaagtttactattaaa |
38156511 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 40425106 - 40425229
Alignment:
| Q |
26 |
ggggtactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactt |
125 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||||||||| | || || || |||||||| |||||||||| ||||||||| | || |||| |||||||||| |
|
|
| T |
40425106 |
ggggcactctttaaagatcccaaatttagaaaatatttcttaaaaatgttaaatgttacaaattccaatacattgattacaaatttttttataaaaactt |
40425205 |
T |
 |
| Q |
126 |
actattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||| || ||||||||||| |
|
|
| T |
40425206 |
actattaatagttcttaaagagtg |
40425229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 28874503 - 28874608
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag |
145 |
Q |
| |
|
||||||||||||| ||| | || ||||| |||||||| |||||||||||||||||||| | | |||||||||||| |||||||||| ||| |||||| |
|
|
| T |
28874503 |
taaatttagaaaacattctttaaaaaagtaaaatgttacaaattccaatgcattgattacacagtttttcataaaaatttactattaatggttgttaaag |
28874602 |
T |
 |
| Q |
146 |
agtgca |
151 |
Q |
| |
|
|||||| |
|
|
| T |
28874603 |
agtgca |
28874608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 48602255 - 48602359
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcat-aaaaacttactattaaaggtacttaaag |
145 |
Q |
| |
|
|||||||||||||||| | || |||||||||||| | ||||||||||||||| |||| | | ||||||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
48602255 |
aaatttagaaaatattccttaaaaaagtcaaatgtgacaaattccaatgcattaattacacagtttttcatgaaaaacttgctattaatggttcttaaag |
48602354 |
T |
 |
| Q |
146 |
agtgc |
150 |
Q |
| |
|
||||| |
|
|
| T |
48602355 |
agtgc |
48602359 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 34591154 - 34591081
Alignment:
| Q |
76 |
aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||| ||||| |||| |||| ||| | |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
34591154 |
aaatgttacaaatttcaatacattagttacacatattttcataaaaacttactattaatggtccttaaagagtg |
34591081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 32071127 - 32071223
Alignment:
| Q |
48 |
aatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaa |
144 |
Q |
| |
|
||||||||||||||| | || ||| |||||||||| ||||||||| || ||||||| || |||||||||||| |||||||||| ||| |||||| |
|
|
| T |
32071127 |
aatttagaaaatattccttaaaaaattcaaatgttacaaattccaaagctttgattacctagtttttcataaaaagttactattaatggttcttaaa |
32071223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 4305237 - 4305156
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttac |
127 |
Q |
| |
|
||||||||||| |||||| | || |||||||||| |||||||||| |||| |||||||| | ||||||||||||||||| |
|
|
| T |
4305237 |
taaatttagaatatattttttaaaaaagtcaaatattataaattctaatgtattgattacacgatttttcataaaaacttac |
4305156 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 30082499 - 30082427
Alignment:
| Q |
78 |
atgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
|||||| |||||||| ||||||||||| | | ||||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
30082499 |
atgttacaaattccattgcattgattacacaacttttcataaaatcttactattaaaagtgtttaaagagtgc |
30082427 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 47461148 - 47461037
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| ||||| ||||||| |||||||| |||| ||| | |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47461148 |
tttaaggatctcaaatttaaaaaatattattaaaaaaaattaaatattataaatttcaatgtattgattatatatattttcataaaaacttactattaaa |
47461049 |
T |
 |
| Q |
135 |
ggtacttaaaga |
146 |
Q |
| |
|
|||||||||| |
|
|
| T |
47461048 |
aatacttaaaga |
47461037 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 12618788 - 12618685
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||||||| ||||| | | |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
12618788 |
aaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaacttaactttaaaggtgtttaaaga |
12618689 |
T |
 |
| Q |
147 |
gtgc |
150 |
Q |
| |
|
|||| |
|
|
| T |
12618688 |
gtgc |
12618685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 11260564 - 11260672
Alignment:
| Q |
42 |
atcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta-ttaaaggtact |
140 |
Q |
| |
|
|||||||||||| |||||||| | || |||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||| |||||| |||||| | || |
|
|
| T |
11260564 |
atcttaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcaatgattacatatattttcatataaatttactatttaaagatgct |
11260663 |
T |
 |
| Q |
141 |
taaagagtg |
149 |
Q |
| |
|
||||||||| |
|
|
| T |
11260664 |
taaagagtg |
11260672 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 53391329 - 53391225
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag |
145 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||| | ||||||| |||| | |||||||||||| ||||||||| |
|
|
| T |
53391329 |
taaatttagaaaatattcttaaaagaagtcaaatgttacaaatttcaatgcattgattgcacatatttttataagagtttactattaaagatacttaaag |
53391230 |
T |
 |
| Q |
146 |
agtgc |
150 |
Q |
| |
|
||||| |
|
|
| T |
53391229 |
agtgc |
53391225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 32693017 - 32692944
Alignment:
| Q |
76 |
aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
32693017 |
aaatgttacaaatttcaatacattgattacacatattttcataaaaacttactattaatggtccttaaagagtg |
32692944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 13800802 - 13800688
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| |||| ||||||||||||||||| | || |||||||||| ||| ||||||| || ||||||||| | | |||||||| ||| |||||||||| |
|
|
| T |
13800802 |
tttaaggatcctaaatttagaaaatattctttaaaaaagtcaaatattacaaattcctatacattgattacacagtttttcatagaaagttactattaat |
13800703 |
T |
 |
| Q |
135 |
ggtacttaaagagtg |
149 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
13800702 |
ggttcttaaagagtg |
13800688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 5799091 - 5798978
Alignment:
| Q |
36 |
ttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaag |
135 |
Q |
| |
|
|||| |||||||||||||||||||||| | | |||||||||| ||| ||||| ||||| ||||||||| | ||||| ||||||| ||| |||||||| |
|
|
| T |
5799091 |
ttaaggatcttaaatttagaaaatattcttttaaaaagtcaaatattacaaatttaaatgcgttgattatacaaatttttataaaaatttattattaaag |
5798992 |
T |
 |
| Q |
136 |
gtacttaaagagtg |
149 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
5798991 |
gttcttgaagagtg |
5798978 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 14949058 - 14948981
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagag |
147 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | | |||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
14949058 |
aaagtcaaatgttacaaatttcaatgcattgattacacaaattttcataaaaacttgttattaaaagtgcttaaagag |
14948981 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 48315925 - 48316020
Alignment:
| Q |
36 |
ttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactatt |
131 |
Q |
| |
|
||||||||| |||||| ||||||||| | || |||||||||||||| ||||| |||||||||||||| | | |||||||||||||||| |||| |
|
|
| T |
48315925 |
ttaacgatcccaaattttgaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacacaacttttcataaaaacttaatatt |
48316020 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 41415845 - 41415742
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||| ||||||||||| | || ||||||| | |||| ||||| |||||||||||||| | | |||| ||||||| |||||||||| ||| |||||||| |
|
|
| T |
41415845 |
aaatatagaaaatattctttaaaaaagtcacaagttacaaattacaatgcattgattaaacaattttttataaaaatttactattaatggttcttaaaga |
41415746 |
T |
 |
| Q |
147 |
gtgc |
150 |
Q |
| |
|
|||| |
|
|
| T |
41415745 |
gtgc |
41415742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 10099372 - 10099478
Alignment:
| Q |
45 |
ttaaatttagaaaatatttat-aaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaa |
143 |
Q |
| |
|
||||||||| ||||||||| | ||| ||| |||||| ||| ||||| |||| |||| |||| | | |||||||||| || |||||| ||||||| ||||| |
|
|
| T |
10099372 |
ttaaatttaaaaaatattttttaaaaaaattcaaattttacaaatttcaatacattaattacacaaattttcataagaaattactaataaaggtgcttaa |
10099471 |
T |
 |
| Q |
144 |
agagtgc |
150 |
Q |
| |
|
||||||| |
|
|
| T |
10099472 |
agagtgc |
10099478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 31072576 - 31072507
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgatta |
104 |
Q |
| |
|
||||| |||| ||||||||||||||||| | | |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
31072576 |
tttaaggatcataaatttagaaaatattctttgaaaaagtcaaatgttacaaattcctatgcattgatta |
31072507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 16555978 - 16556066
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
|||||||||||||||||| | | | | |||||| ||| ||||| |||||||||||||| | | ||||| ||||||||||| ||||||| |
|
|
| T |
16555978 |
taaatttagaaaatatttcttacaacattcaaatattacaaatttcaatgcattgattacacaaatttttataaaaacttattattaaa |
16556066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 2076849 - 2076880
Alignment:
| Q |
91 |
caatgcattgattatatatattttcataaaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2076849 |
caatgcattgattatatatattttcataaaaa |
2076880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 41370218 - 41370159
Alignment:
| Q |
91 |
caatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||||||| || || |||||| ||||| |
|
|
| T |
41370218 |
caatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgc |
41370159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 134855 - 134956
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||| ||||||| | || || || |||||||||||||| |||| |||||||| ||| |||||||| |||| ||||| |||||||| |||||| | |
|
|
| T |
134855 |
aaatttagtaaatattctttaaaaaggttaaatgttataaatttcaat-aattgattacatagattttcatgaaaatttactgttaaaggtgcttaaaaa |
134953 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
134954 |
gtg |
134956 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 32104303 - 32104348
Alignment:
| Q |
92 |
aatgcattgattatatatattttcataaaaacttactattaaaggt |
137 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
32104303 |
aatgcattgaatatataaattttcataaaaacttattatttaaggt |
32104348 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 30624731 - 30624807
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||||| |||| ||||| ||||||| | |||| ||| |||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
30624731 |
aaagtcaaaagttacaaatttcaatgcactaattacatagtttttcataaaaacttattattaatggtttttaaaga |
30624807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 24733167 - 24733287
Alignment:
| Q |
30 |
tactatttaacgatcttaaatttagaaaatatt-tataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttact |
128 |
Q |
| |
|
|||| ||||| |||| ||||||| |||||||| | |||| |||||||||||||| ||||| || ||||||||||| | | ||||| ||||||||||||| |
|
|
| T |
24733167 |
tactctttaaggatcccaaatttaaaaaatattctctaaa-aaagtcaaatgttacaaattacagtgcattgattacacaaatttttataaaaacttact |
24733265 |
T |
 |
| Q |
129 |
attaaaggtacttaaagagtgc |
150 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24733266 |
attaaaggtacttaaagagtgc |
24733287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 16459253 - 16459358
Alignment:
| Q |
45 |
ttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaa |
144 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||| ||||| ||||||| ||| | | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
16459253 |
ttaaatttaaaaaatattcttaaaaaaagtcaaatgttacaaatttcaatgcacgagttacacaatttttcataaaaacttactattaaaggtgcttaaa |
16459352 |
T |
 |
| Q |
145 |
gagtgc |
150 |
Q |
| |
|
|||||| |
|
|
| T |
16459353 |
gagtgc |
16459358 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 29217543 - 29217658
Alignment:
| Q |
30 |
tactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta |
129 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||| | || || ||||||| ||| ||||||||||||| |||||| | | |||||| |||||| || ||| |
|
|
| T |
29217543 |
tactttttaaagattttaaatttagaaaatatttcttaaaaaggtcaaatattacaaattccaatgcagtgattacacagattttcgtaaaaaatttcta |
29217642 |
T |
 |
| Q |
130 |
ttaaaggtacttaaag |
145 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
29217643 |
ttaaaagtgcttaaag |
29217658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 44960504 - 44960578
Alignment:
| Q |
76 |
aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| ||| ||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
44960504 |
aaatattacaaatttcaatgcattgattacataaattttcataaaaatttactattaaaagtgcttaaagagtgc |
44960578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 35210038 - 35209925
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| ||||| ||||||| |||||||| | || ||||| |||||||| ||||||||||| ||| || | | | ||||| |||||||||| |||||||| |
|
|
| T |
35210038 |
tttaaggatctcaaatttaaaaaatattccttaaaaaagttaaatgttacaaattccaatgtattaatcacacaaattttaataaaaacttcctattaaa |
35209939 |
T |
 |
| Q |
135 |
ggtacttaaagagt |
148 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
35209938 |
ggttcttaaagagt |
35209925 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 9200030 - 9200152
Alignment:
| Q |
28 |
ggtactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttac |
127 |
Q |
| |
|
|||||| ||||| |||| ||||||| ||||||||| | || ||| |||||||||| |||||| |||||| | |||||| | ||||| |||||| || | |
|
|
| T |
9200030 |
ggtactctttaaggatcccaaatttaaaaaatatttctcaaaaaaatcaaatgttacaaattcaaatgcactaattatacaaatttttgtaaaaatttgc |
9200129 |
T |
 |
| Q |
128 |
tattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
9200130 |
cattaaaggtgcttaaagagtgc |
9200152 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 44253819 - 44253920
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||||||||||| || ||||||||| | | ||||| ||||||||||| | || || || |||||||| |
|
|
| T |
44253819 |
aaatttaaaaaatatttttaaaaaaagtcaaatgttataaattttaaatcattgattacacaaatttt-ataaaaacttattgttcaaagtgcttaaaga |
44253917 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
44253918 |
gtg |
44253920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 32959851 - 32959811
Alignment:
| Q |
110 |
attttcataaaaacttactattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
32959851 |
attttcataaaaacttactattaaagatgcttaaagagtgc |
32959811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 40852141 - 40852101
Alignment:
| Q |
91 |
caatgcattgattatatatattttcataaaaacttactatt |
131 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
40852141 |
caatgcattgaatatacatattttcataaaaacttactatt |
40852101 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 32572807 - 32572911
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag |
145 |
Q |
| |
|
|||||||||||||| || | || ||||||||||||||||||||||||| |||| ||| ||| ||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
32572807 |
taaatttagaaaatgttatttaaaaaagtcaaatgttataaattccaatacattacttacataaatttttgtaaaaaattactattaaaggtgcttaaag |
32572906 |
T |
 |
| Q |
146 |
agtgc |
150 |
Q |
| |
|
||||| |
|
|
| T |
32572907 |
agtgc |
32572911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 46803528 - 46803630
Alignment:
| Q |
48 |
aatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagag |
147 |
Q |
| |
|
|||||||||| ||||| | | ||||||||| |||| |||| |||||||||||||| | |||||||| |||||| |||||||||||||| ||||||||| |
|
|
| T |
46803528 |
aatttagaaagtattttttataaaagtcaaacgttactaatttcaatgcattgattacacatattttcttaaaaagttactattaaaggtgcttaaagag |
46803627 |
T |
 |
| Q |
148 |
tgc |
150 |
Q |
| |
|
||| |
|
|
| T |
46803628 |
tgc |
46803630 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 46087097 - 46087211
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| |||| ||||||||||||||||| | || ||||| ||||||| | |||| |||||| |||||||| | |||||||||||||||| ||||||| |
|
|
| T |
46087097 |
tttaaggatcctaaatttagaaaatattcctcaa-aaagttaaatgtttcacattctaatgcactgattatacagattttcataaaaacttgttattaaa |
46087195 |
T |
 |
| Q |
135 |
ggtacttaaagagtgc |
150 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
46087196 |
ggtgcttaaagagtgc |
46087211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 9534407 - 9534486
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||||| ||||||||| ||||||| | ||| || | ||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
9534407 |
aaagtcaaatattataaatttcaatgcactaattttacaaattttcataaaaatttattattaaaggtgcttaaagagtg |
9534486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 27004134 - 27004015
Alignment:
| Q |
30 |
tactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta |
129 |
Q |
| |
|
|||| ||||| |||| |||||||| ||||||||| | || ||||| ||||||||| |||| |||||||||||||| | | ||||| |||||| ||| || |
|
|
| T |
27004134 |
tactttttaaagatcctaaatttaaaaaatattttttaaaaaagttaaatgttatcaatttcaatgcattgattacacaatttttcttaaaaatttatta |
27004035 |
T |
 |
| Q |
130 |
ttaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||| | | ||||||||||| |
|
|
| T |
27004034 |
ttaatgattcttaaagagtg |
27004015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 28441575 - 28441677
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| ||||||||| ||| |||| | ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
28441575 |
aaatttaaaaaatatttccaacaaaagttaaatgttacaaattccaaaatattaattacacatatttttataaaaacttactattaaaggtgtttaaaga |
28441674 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
28441675 |
gtg |
28441677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 2484979 - 2484909
Alignment:
| Q |
76 |
aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||| ||||||||| ||||||||| | |||||| |||||||||||| |||||||| ||| || |||||||| |
|
|
| T |
2484979 |
aaatattataaatttcaatgcattaaatatataaattttcataaaagcttactatcaaaagtccttaaaga |
2484909 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 16790350 - 16790292
Alignment:
| Q |
36 |
ttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaat |
94 |
Q |
| |
|
|||| |||| |||||||||||||| ||| | || ||||||||||||||||||||||||| |
|
|
| T |
16790350 |
ttaaggatcctaaatttagaaaatcttttttaaaaaagtcaaatgttataaattccaat |
16790292 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 44971713 - 44971753
Alignment:
| Q |
110 |
attttcataaaaacttactattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
44971713 |
attttcgtaaaaacttactattaaaggtgcttaaagagtgc |
44971753 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 17112741 - 17112791
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaa |
120 |
Q |
| |
|
|||||||||| || | | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17112741 |
aaagtcaaatattttgatttccaatgcattgattacatatattttcataaa |
17112791 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 26756281 - 26756192
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaag |
135 |
Q |
| |
|
|||||||| |||||||| | || |||||||||| ||| ||| || |||||||| |||| | |||||| ||||||||||||||||||| |
|
|
| T |
26756281 |
taaatttaaaaaatattatttaaaaaagtcaaatattacaaactctaatgcatttattactcaaattttcgtaaaaacttactattaaag |
26756192 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 35438082 - 35438041
Alignment:
| Q |
88 |
ttccaatgcattgattatatatattttcataaaaacttacta |
129 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
35438082 |
ttccaatgcattgaatatacatattttcataaaaactcacta |
35438041 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 6170954 - 6170918
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattata |
106 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
6170954 |
aaagtcaaatgttttaatttccaatgcattgattata |
6170918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 2347429 - 2347530
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||| ||||||| | || ||| |||||| ||| ||||| |||||||||||||| ||| ||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
2347429 |
aaatttagtaaatattcctcaaaaaaatcaaatattacaaatttcaatgcattgattacataaattttaataaaaatttactattaaaggtgcttaaaga |
2347528 |
T |
 |
| Q |
147 |
gt |
148 |
Q |
| |
|
|| |
|
|
| T |
2347529 |
gt |
2347530 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 36189491 - 36189592
Alignment:
| Q |
47 |
aaatttagaaaatatt-tataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag |
145 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||| || |||||||||| |||||||| | ||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
36189491 |
aaatttagaaaatattctataaaaaaagccaaatattgcaaattccaatatattgattacacatattttcataaaaacttattattacaggtgcttaaag |
36189590 |
T |
 |
| Q |
146 |
ag |
147 |
Q |
| |
|
|| |
|
|
| T |
36189591 |
ag |
36189592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 46726148 - 46726247
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||| ||||| |||||||||||||| ||| |||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
46726148 |
aaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacatagtttttcataaaaatttactattaatggtttttaaaga |
46726247 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 44543728 - 44543820
Alignment:
| Q |
41 |
gatcttaaatttagaaaatatt-tataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaa |
133 |
Q |
| |
|
||||| ||||||| |||||||| |||||| || |||||||||||||||||| ||||||||||||| | || |||| ||||||| || ||||||| |
|
|
| T |
44543728 |
gatctcaaatttaaaaaatattctataaa-aatgtcaaatgttataaattcaaatgcattgattacacatttttttataaaaaatttctattaa |
44543820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 2959680 - 2959568
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||| |||| |||||| | ||||||||| | | ||||| |||||||||||||| ||||||||||||| ||| |||||||||||| ||| ||||||| |
|
|
| T |
2959680 |
tttaaggatcataaattaaaaaaatattttttgaaaaagttaaatgttataaattttaatgcattgattacataatttttcataaaaatttattattaaa |
2959581 |
T |
 |
| Q |
135 |
ggtacttaaagag |
147 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2959580 |
agtgtttaaagag |
2959568 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 19559997 - 19559933
Alignment:
| Q |
85 |
aaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
||||| ||| |||||||||| |||| || |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
19559997 |
aaatttcaacgcattgattacatattttctcataaaaacttactattaatggttcttaaagagtg |
19559933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 36939471 - 36939562
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactta |
126 |
Q |
| |
|
||||| ||||||||||||| |||||||| | || |||||||||||||| ||||| || |||||| |||| | | |||| |||||||||||| |
|
|
| T |
36939471 |
tttaaggatcttaaatttaaaaaatattcctcaaaaaagtcaaatgttacaaatttcagtgcattaattacacaaatttacataaaaactta |
36939562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 39156055 - 39156131
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
|||||||||| || |||||| ||||||| | | ||||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
39156055 |
aaagtcaaatattttaaatttcaatgcacttaatatatggattttcataaaaatttactattaaaggtctttaaaga |
39156131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 4133857 - 4133810
Alignment:
| Q |
74 |
tcaaatgttataaattccaatgcattgattatatatattttcataaaa |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
4133857 |
tcaaatgttacaaatttcaatgcattgattataaagattttcataaaa |
4133810 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 28252022 - 28251984
Alignment:
| Q |
91 |
caatgcattgattatatatattttcataaaaacttacta |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
28252022 |
caatgcattgattatatacattttcataaatacttacta |
28251984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 4806568 - 4806495
Alignment:
| Q |
76 |
aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
4806568 |
aaatgttacaaatttcaatacattgattacacatattttcataaaaacttactattaatggttcttaaagagtg |
4806495 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 15588667 - 15588769
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||||| |||||||| | || ||| | |||||||| ||||| |||||||||||||| ||| |||||||||||||||||| |||| | | |||||||| |
|
|
| T |
15588667 |
aaatttataaaatattctttaaaaaaattaaatgttacaaatttcaatgcattgattacataatttttcataaaaacttactgttaatgattcttaaaga |
15588766 |
T |
 |
| Q |
147 |
gtg |
149 |
Q |
| |
|
||| |
|
|
| T |
15588767 |
gtg |
15588769 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 6555133 - 6555050
Alignment:
| Q |
46 |
taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta |
129 |
Q |
| |
|
|||||||||||| |||| | || |||||||||||||||||||| ||||||||| |||| | ||||| |||||||||||||| |
|
|
| T |
6555133 |
taaatttagaaagtattccttaaaaaagtcaaatgttataaatttcaatgcattaattacactgatttttataaaaacttacta |
6555050 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 31702789 - 31702732
Alignment:
| Q |
92 |
aatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
||||||||||||| | ||||||| ||||||| |||||||| |||| ||||||||||| |
|
|
| T |
31702789 |
aatgcattgattacacatatttttataaaaagttactatttaaggatcttaaagagtg |
31702732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 24173181 - 24173280
Alignment:
| Q |
35 |
tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa |
134 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||| | |||||||| ||||||||||||||| |||| | ||||||||| |||| |||||||||||| |
|
|
| T |
24173181 |
tttaacgatctcaaatttagaaaatattttttttaaaaattaaatgttacaaattccaatgcattaattacaaatattttcaaaaaaccttactattaaa |
24173280 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 2689349 - 2689269
Alignment:
| Q |
41 |
gatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaa |
122 |
Q |
| |
|
||||||||||||| ||||||||| | || ||| ||||||||||||||||| |||| ||||||||| ||||||| ||||||| |
|
|
| T |
2689349 |
gatcttaaatttaaaaaatattttttaaaaaa-tcaaatgttataaattcaaatgttttgattatacatatttttataaaaa |
2689269 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 31558093 - 31558024
Alignment:
| Q |
74 |
tcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaa |
143 |
Q |
| |
|
|||||||||| ||||| |||| |||| |||||||| ||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
31558093 |
tcaaatgttacaaatttcaatacatttattatataaattttcataaaaatttattattaaaggtgcttaa |
31558024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 231334 - 231408
Alignment:
| Q |
76 |
aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc |
150 |
Q |
| |
|
||||| |||||||| ||||||||||||||| | ||||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
231334 |
aaatgctataaattttaatgcattgattataaagtttttcattaaaacttactattaatgattcttaaagagtgc |
231408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 41583578 - 41583654
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga |
146 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||| || | | ||||||||||||| |||||||| ||| | |||||||| |
|
|
| T |
41583578 |
aaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga |
41583654 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 2827658 - 2827579
Alignment:
| Q |
47 |
aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactta |
126 |
Q |
| |
|
|||||||||||||||| | || |||||||||||||| || || ||||||||||||| | | ||||| ||||||||||| |
|
|
| T |
2827658 |
aaatttagaaaatattatttaagaaagtcaaatgttacaagtttcaatgcattgattgcacaaattttaataaaaactta |
2827579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 8453890 - 8453949
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta |
129 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
8453890 |
aaagtcaaatgttacaatttctaatgcattgattacatacgtttttataaaaacttacta |
8453949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 12198230 - 12198309
Alignment:
| Q |
70 |
aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg |
149 |
Q |
| |
|
|||||||||| ||| ||||| |||||| || ||| | ||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
12198230 |
aaagtcaaatattacaaatttcaatgctttaattgcacatattttcataaaaatttactattaattgtccttaaagagtg |
12198309 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 31889641 - 31889709
Alignment:
| Q |
60 |
atttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttact |
128 |
Q |
| |
|
||||||||| ||||| |||| || || ||| ||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
31889641 |
atttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact |
31889709 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University