View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_200 (Length: 311)

Name: NF8981_low_200
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_200
NF8981_low_200
[»] chr2 (17 HSPs)
chr2 (47-150)||(22440134-22440237)
chr2 (47-150)||(24792001-24792105)
chr2 (35-148)||(2713420-2713533)
chr2 (47-150)||(35022619-35022722)
chr2 (74-149)||(41073106-41073181)
chr2 (47-149)||(24762706-24762808)
chr2 (47-149)||(35443484-35443586)
chr2 (47-143)||(815008-815104)
chr2 (47-150)||(24765347-24765450)
chr2 (47-149)||(34233914-34234016)
chr2 (65-137)||(43791918-43791990)
chr2 (70-149)||(20128365-20128444)
chr2 (47-134)||(45522702-45522789)
chr2 (70-122)||(7271815-7271867)
chr2 (46-104)||(20555491-20555550)
chr2 (97-144)||(28453337-28453384)
chr2 (47-125)||(15690187-15690265)
[»] chr3 (11 HSPs)
chr3 (47-148)||(25753497-25753598)
chr3 (35-148)||(48811361-48811474)
chr3 (47-148)||(45529112-45529213)
chr3 (35-134)||(38156511-38156609)
chr3 (26-149)||(40425106-40425229)
chr3 (46-151)||(28874503-28874608)
chr3 (47-150)||(48602255-48602359)
chr3 (76-149)||(34591081-34591154)
chr3 (48-144)||(32071127-32071223)
chr3 (46-127)||(4305156-4305237)
chr3 (78-150)||(30082427-30082499)
[»] chr4 (18 HSPs)
chr4 (35-146)||(47461037-47461148)
chr4 (47-150)||(12618685-12618788)
chr4 (42-149)||(11260564-11260672)
chr4 (46-150)||(53391225-53391329)
chr4 (76-149)||(32692944-32693017)
chr4 (35-149)||(13800688-13800802)
chr4 (36-149)||(5798978-5799091)
chr4 (70-147)||(14948981-14949058)
chr4 (36-131)||(48315925-48316020)
chr4 (47-150)||(41415742-41415845)
chr4 (45-150)||(10099372-10099478)
chr4 (35-104)||(31072507-31072576)
chr4 (46-134)||(16555978-16556066)
chr4 (91-122)||(2076849-2076880)
chr4 (91-150)||(41370159-41370218)
chr4 (47-149)||(134855-134956)
chr4 (92-137)||(32104303-32104348)
chr4 (70-146)||(30624731-30624807)
[»] chr8 (9 HSPs)
chr8 (30-150)||(24733167-24733287)
chr8 (45-150)||(16459253-16459358)
chr8 (30-145)||(29217543-29217658)
chr8 (76-150)||(44960504-44960578)
chr8 (35-148)||(35209925-35210038)
chr8 (28-150)||(9200030-9200152)
chr8 (47-149)||(44253819-44253920)
chr8 (110-150)||(32959811-32959851)
chr8 (91-131)||(40852101-40852141)
[»] chr1 (13 HSPs)
chr1 (46-150)||(32572807-32572911)
chr1 (48-150)||(46803528-46803630)
chr1 (35-150)||(46087097-46087211)
chr1 (70-149)||(9534407-9534486)
chr1 (30-149)||(27004015-27004134)
chr1 (47-149)||(28441575-28441677)
chr1 (76-146)||(2484909-2484979)
chr1 (36-94)||(16790292-16790350)
chr1 (110-150)||(44971713-44971753)
chr1 (70-120)||(17112741-17112791)
chr1 (46-135)||(26756192-26756281)
chr1 (88-129)||(35438041-35438082)
chr1 (70-106)||(6170918-6170954)
[»] chr7 (10 HSPs)
chr7 (47-148)||(2347429-2347530)
chr7 (47-147)||(36189491-36189592)
chr7 (47-146)||(46726148-46726247)
chr7 (41-133)||(44543728-44543820)
chr7 (35-147)||(2959568-2959680)
chr7 (85-149)||(19559933-19559997)
chr7 (35-126)||(36939471-36939562)
chr7 (70-146)||(39156055-39156131)
chr7 (74-121)||(4133810-4133857)
chr7 (91-129)||(28251984-28252022)
[»] chr6 (4 HSPs)
chr6 (76-149)||(4806495-4806568)
chr6 (47-149)||(15588667-15588769)
chr6 (46-129)||(6555050-6555133)
chr6 (92-149)||(31702732-31702789)
[»] chr5 (9 HSPs)
chr5 (35-134)||(24173181-24173280)
chr5 (41-122)||(2689269-2689349)
chr5 (74-143)||(31558024-31558093)
chr5 (76-150)||(231334-231408)
chr5 (70-146)||(41583578-41583654)
chr5 (47-126)||(2827579-2827658)
chr5 (70-129)||(8453890-8453949)
chr5 (70-149)||(12198230-12198309)
chr5 (60-128)||(31889641-31889709)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 22440237 - 22440134
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||||||||||  | || ||| |||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
22440237 aaatttagaaaatattcttcaaaaaattcaaatgttacaagtttcaatgcattgattacatatattttcataaaaacttactattaaaggtacttaaaga 22440138  T
147 gtgc 150  Q
    ||||    
22440137 gtgc 22440134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 24792001 - 24792105
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatat-attttcataaaaacttactattaaaggtacttaaag 145  Q
    ||||||||||||||||  | || |||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||| ||| |||||||    
24792001 aaatttagaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgattacatataatttttataaaaacttactattaatggttcttaaag 24792100  T
146 agtgc 150  Q
    |||||    
24792101 agtgc 24792105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 2713533 - 2713420
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| |||| ||||||| |||||||||  | || |||||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||||||||||    
2713533 tttaaagatcataaatttggaaaatattcttcaaaaaagtcaaatgttacaaattccaatgcaatgattatacagattttcatcaaaacttactattaaa 2713434  T
135 ggtacttaaagagt 148  Q
    |||  |||||||||    
2713433 ggtgtttaaagagt 2713420  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 35022619 - 35022722
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||| ||||||||| | || |||||||||| |||||||||  ||||||||||||| | ||||||| |||||||||||| ||||| ||| ||||||||    
35022619 aaatttaaaaaatatttcttaaaaaagtcaaatattataaattttaatgcattgattacacatattttaataaaaacttacaattaatggtccttaaaga 35022718  T
147 gtgc 150  Q
    ||||    
35022719 gtgc 35022722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 41073181 - 41073106
Alignment:
74 tcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||    
41073181 tcaaatattataaatttcaatgcattgaatatatatattttcataaaaacttattattaaaggtctttaaagagtg 41073106  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 24762808 - 24762706
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||||||||||  | || |||||||||| ||| ||||||||||  |||||||||| ||||||| ||||||||||||||  || ||| ||||||||    
24762808 aaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattgattatacatatttttataaaaacttactagaaatggtccttaaaga 24762709  T
147 gtg 149  Q
    |||    
24762708 gtg 24762706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 35443586 - 35443484
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||| ||||||||| | || ||||||||||||||||||||  |||||| |||||| | | |||||  ||||||||||| |||||| |||||||||||    
35443586 aaatttaaaaaatatttctcaaaaaagtcaaatgttataaattttaatgcactgattacacaaatttttgtaaaaacttacgattaaaagtacttaaaga 35443487  T
147 gtg 149  Q
    |||    
35443486 gtg 35443484  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 815008 - 815104
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaa 143  Q
    ||||||||||| ||||| | || ||| |||||||| | |||||||||||||||||||| |   ||||||||||||||||||| |||||||| |||||    
815008 aaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaatgcattgattacaccgattttcataaaaacttacttttaaaggtgcttaa 815104  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 24765347 - 24765450
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||||||||||  | || ||| |||||| ||| |||||||||||||||||||| | ||||||| |||| |||||||||  || ||| ||||||||    
24765347 aaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttttataataacttactagaaatggtccttaaaga 24765446  T
147 gtgc 150  Q
    ||||    
24765447 gtgc 24765450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 34234016 - 34233914
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    |||||||| |||||||  | || |||||||||| ||| ||||| |||||||||||||| | | ||||  ||||||| |||||||||||||| ||||||||    
34234016 aaatttagtaaatattactcaaaaaagtcaaatattacaaatttcaatgcattgattacacaaatttgaataaaaatttactattaaaggtgcttaaaga 34233917  T
147 gtg 149  Q
    |||    
34233916 gtg 34233914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 43791990 - 43791918
Alignment:
65 taaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggt 137  Q
    |||| ||| |||||||||| |||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||    
43791990 taaaaaaaatcaaatgttacaaattctaatgcattaattatatagatttttataaaaacttattattaaaggt 43791918  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 20128365 - 20128444
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||||||||||| |||||||||||||||||||| |  |||||| ||||||| || |||||||| ||  ||||||||||    
20128365 aaagtcaaatgttacaaattccaatgcattgattacacgtatttttataaaaaatttctattaaaagtgtttaaagagtg 20128444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 45522702 - 45522789
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||||| |||||||||   || ||||| |||||||||||||| |||| |||||||||| || |||||  ||||| ||||||||||||    
45522702 aaatttaaaaaatatttcacaaaaaagttaaatgttataaatttcaatacattgattatgtagatttttctaaaatcttactattaaa 45522789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 7271815 - 7271867
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaa 122  Q
    |||||||||| || | | ||||||||||||||||| |||||||||||||||||    
7271815 aaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaa 7271867  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 20555550 - 20555491
Alignment:
46 taaatttagaaaatatttat-aaataaagtcaaatgttataaattccaatgcattgatta 104  Q
    |||| ||| ||||||||||| ||| ||||| ||||||||||||||||||| |||||||||    
20555550 taaaattaaaaaatatttattaaaaaaagttaaatgttataaattccaatacattgatta 20555491  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 28453337 - 28453384
Alignment:
97 attgattatatatattttcataaaaacttactattaaaggtacttaaa 144  Q
    |||||||||| | ||||||||||||||||||||||||| || ||||||    
28453337 attgattatacaaattttcataaaaacttactattaaaagtgcttaaa 28453384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 15690265 - 15690187
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactt 125  Q
    ||||| ||||||||||| | || ||| |||||| ||| |||||  ||||||||||||| | ||||||| ||||||||||    
15690265 aaattaagaaaatatttctcaaaaaaatcaaatattacaaattttaatgcattgattacacatatttttataaaaactt 15690187  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 25753497 - 25753598
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||||||||||  | |||||||||||||||||||| || ||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||    
25753497 aaatttagaaaatattcttcaataaagtcaaatgttataagtttcaatgcattaattacataaattttcataaaaacttactattaaaggtgcttaaaga 25753596  T
147 gt 148  Q
    ||    
25753597 gt 25753598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 48811474 - 48811361
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| |||| ||||||||||||||||| || || |||||| ||||||| ||||| |||||||||||||| | |  ||||||||||||||||||||||||    
48811474 tttaaggatcctaaatttagaaaatattcattaaaaaagtctaatgttacaaatttcaatgcattgattacacaatttttcataaaaacttactattaaa 48811375  T
135 ggtacttaaagagt 148  Q
     ||  |||||||||    
48811374 agtttttaaagagt 48811361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 45529213 - 45529112
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||||||||||  | || ||||||||| |||| || || || ||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
45529213 aaatttagaaaatattcttcaaaaaagtcaaacgttacaagtttcagtgcattgattacataaattttcataaaaacttactattaagggtgcttaaaga 45529114  T
147 gt 148  Q
    ||    
45529113 gt 45529112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 38156609 - 38156511
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| ||||||||||||||||| ||||| | || |||||||||||||| ||||| |||||||||||||| | ||||||| ||||||  |||||||||||    
38156609 tttaaggatcttaaatttagaaagtattttttaa-aaagtcaaatgttacaaatttcaatgcattgattacacatattttaataaaagtttactattaaa 38156511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 40425106 - 40425229
Alignment:
26 ggggtactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactt 125  Q
    |||| ||| ||||| ||||  ||||||||||||||||| | || || || |||||||| |||||||||| ||||||||| | || |||| ||||||||||    
40425106 ggggcactctttaaagatcccaaatttagaaaatatttcttaaaaatgttaaatgttacaaattccaatacattgattacaaatttttttataaaaactt 40425205  T
126 actattaaaggtacttaaagagtg 149  Q
    ||||||||  || |||||||||||    
40425206 actattaatagttcttaaagagtg 40425229  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 28874503 - 28874608
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag 145  Q
    ||||||||||||| |||  | || ||||| |||||||| |||||||||||||||||||| | |  |||||||||||| |||||||||| |||  ||||||    
28874503 taaatttagaaaacattctttaaaaaagtaaaatgttacaaattccaatgcattgattacacagtttttcataaaaatttactattaatggttgttaaag 28874602  T
146 agtgca 151  Q
    ||||||    
28874603 agtgca 28874608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 48602255 - 48602359
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcat-aaaaacttactattaaaggtacttaaag 145  Q
    ||||||||||||||||  | || |||||||||||| | ||||||||||||||| |||| | |  ||||||| |||||||| ||||||| ||| |||||||    
48602255 aaatttagaaaatattccttaaaaaagtcaaatgtgacaaattccaatgcattaattacacagtttttcatgaaaaacttgctattaatggttcttaaag 48602354  T
146 agtgc 150  Q
    |||||    
48602355 agtgc 48602359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 34591154 - 34591081
Alignment:
76 aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||||| ||||| |||| ||||  ||| | |||||||||||||||||||||||||| ||| |||||||||||    
34591154 aaatgttacaaatttcaatacattagttacacatattttcataaaaacttactattaatggtccttaaagagtg 34591081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 32071127 - 32071223
Alignment:
48 aatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaa 144  Q
    |||||||||||||||  | || ||| |||||||||| ||||||||| || |||||||  ||  |||||||||||| |||||||||| ||| ||||||    
32071127 aatttagaaaatattccttaaaaaattcaaatgttacaaattccaaagctttgattacctagtttttcataaaaagttactattaatggttcttaaa 32071223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 4305237 - 4305156
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttac 127  Q
    ||||||||||| |||||| | || |||||||||| |||||||||| |||| |||||||| |    |||||||||||||||||    
4305237 taaatttagaatatattttttaaaaaagtcaaatattataaattctaatgtattgattacacgatttttcataaaaacttac 4305156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 30082499 - 30082427
Alignment:
78 atgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc 150  Q
    |||||| |||||||| ||||||||||| | |  ||||||||||| |||||||||||| ||  |||||||||||    
30082499 atgttacaaattccattgcattgattacacaacttttcataaaatcttactattaaaagtgtttaaagagtgc 30082427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 47461148 - 47461037
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| ||||| ||||||| ||||||||  |||| ||| | |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
47461148 tttaaggatctcaaatttaaaaaatattattaaaaaaaattaaatattataaatttcaatgtattgattatatatattttcataaaaacttactattaaa 47461049  T
135 ggtacttaaaga 146  Q
      ||||||||||    
47461048 aatacttaaaga 47461037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 12618788 - 12618685
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||||| ||||| |  | |||||||||||||||||||| |||||||||||||||| | |||||||||||||||||   ||||||||  |||||||    
12618788 aaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaacttaactttaaaggtgtttaaaga 12618689  T
147 gtgc 150  Q
    ||||    
12618688 gtgc 12618685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 11260564 - 11260672
Alignment:
42 atcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta-ttaaaggtact 140  Q
    |||||||||||| ||||||||  | || |||||||||||||| ||||| ||||||| |||||| ||||||||||||| ||| |||||| |||||| | ||    
11260564 atcttaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcaatgattacatatattttcatataaatttactatttaaagatgct 11260663  T
141 taaagagtg 149  Q
    |||||||||    
11260664 taaagagtg 11260672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 53391329 - 53391225
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag 145  Q
    |||||||||||||||||  ||||  ||||||||||||| ||||| |||||||||||||  | ||||||| |||| |  |||||||||||| |||||||||    
53391329 taaatttagaaaatattcttaaaagaagtcaaatgttacaaatttcaatgcattgattgcacatatttttataagagtttactattaaagatacttaaag 53391230  T
146 agtgc 150  Q
    |||||    
53391229 agtgc 53391225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 32693017 - 32692944
Alignment:
76 aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||||| ||||| |||| ||||||||| | |||||||||||||||||||||||||| ||| |||||||||||    
32693017 aaatgttacaaatttcaatacattgattacacatattttcataaaaacttactattaatggtccttaaagagtg 32692944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 13800802 - 13800688
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| |||| |||||||||||||||||  | || |||||||||| ||| ||||||| || ||||||||| | |  |||||||| ||| ||||||||||     
13800802 tttaaggatcctaaatttagaaaatattctttaaaaaagtcaaatattacaaattcctatacattgattacacagtttttcatagaaagttactattaat 13800703  T
135 ggtacttaaagagtg 149  Q
    ||| |||||||||||    
13800702 ggttcttaaagagtg 13800688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 5799091 - 5798978
Alignment:
36 ttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaag 135  Q
    |||| ||||||||||||||||||||||  |  | |||||||||| ||| |||||  ||||| ||||||||| | ||||| ||||||| ||| ||||||||    
5799091 ttaaggatcttaaatttagaaaatattcttttaaaaagtcaaatattacaaatttaaatgcgttgattatacaaatttttataaaaatttattattaaag 5798992  T
136 gtacttaaagagtg 149  Q
    || ||| |||||||    
5798991 gttcttgaagagtg 5798978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 14949058 - 14948981
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagag 147  Q
    |||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||  ||||||| || |||||||||    
14949058 aaagtcaaatgttacaaatttcaatgcattgattacacaaattttcataaaaacttgttattaaaagtgcttaaagag 14948981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 48315925 - 48316020
Alignment:
36 ttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactatt 131  Q
    |||||||||  |||||| |||||||||  | || |||||||||||||| ||||| |||||||||||||| | |  |||||||||||||||| ||||    
48315925 ttaacgatcccaaattttgaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacacaacttttcataaaaacttaatatt 48316020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 41415845 - 41415742
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    |||| |||||||||||  | || ||||||| | |||| ||||| |||||||||||||| | |  |||| ||||||| |||||||||| ||| ||||||||    
41415845 aaatatagaaaatattctttaaaaaagtcacaagttacaaattacaatgcattgattaaacaattttttataaaaatttactattaatggttcttaaaga 41415746  T
147 gtgc 150  Q
    ||||    
41415745 gtgc 41415742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 10099372 - 10099478
Alignment:
45 ttaaatttagaaaatatttat-aaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaa 143  Q
    ||||||||| ||||||||| | ||| ||| |||||| ||| ||||| |||| |||| |||| | | |||||||||| || |||||| ||||||| |||||    
10099372 ttaaatttaaaaaatattttttaaaaaaattcaaattttacaaatttcaatacattaattacacaaattttcataagaaattactaataaaggtgcttaa 10099471  T
144 agagtgc 150  Q
    |||||||    
10099472 agagtgc 10099478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 31072576 - 31072507
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgatta 104  Q
    ||||| |||| |||||||||||||||||  |  | |||||||||||||| ||||||| ||||||||||||    
31072576 tttaaggatcataaatttagaaaatattctttgaaaaagtcaaatgttacaaattcctatgcattgatta 31072507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 16555978 - 16556066
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    |||||||||||||||||| | |  | | |||||| ||| ||||| |||||||||||||| | | ||||| ||||||||||| |||||||    
16555978 taaatttagaaaatatttcttacaacattcaaatattacaaatttcaatgcattgattacacaaatttttataaaaacttattattaaa 16556066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 2076849 - 2076880
Alignment:
91 caatgcattgattatatatattttcataaaaa 122  Q
    ||||||||||||||||||||||||||||||||    
2076849 caatgcattgattatatatattttcataaaaa 2076880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 41370218 - 41370159
Alignment:
91 caatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc 150  Q
    |||||||||||||| | | |||||||||||||||||||||| || || |||||| |||||    
41370218 caatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgc 41370159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 134855 - 134956
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    |||||||| |||||||  | || || || |||||||||||||| ||||  |||||||| ||| |||||||| |||| ||||| |||||||| |||||| |    
134855 aaatttagtaaatattctttaaaaaggttaaatgttataaatttcaat-aattgattacatagattttcatgaaaatttactgttaaaggtgcttaaaaa 134953  T
147 gtg 149  Q
    |||    
134954 gtg 134956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 32104303 - 32104348
Alignment:
92 aatgcattgattatatatattttcataaaaacttactattaaaggt 137  Q
    |||||||||| |||||| ||||||||||||||||| |||| |||||    
32104303 aatgcattgaatatataaattttcataaaaacttattatttaaggt 32104348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 30624731 - 30624807
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||||| |||| ||||| ||||||| | |||| |||  |||||||||||||||| |||||| |||  |||||||    
30624731 aaagtcaaaagttacaaatttcaatgcactaattacatagtttttcataaaaacttattattaatggtttttaaaga 30624807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 24733167 - 24733287
Alignment:
30 tactatttaacgatcttaaatttagaaaatatt-tataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttact 128  Q
    |||| ||||| ||||  ||||||| |||||||| | |||| |||||||||||||| ||||| || ||||||||||| | | ||||| |||||||||||||    
24733167 tactctttaaggatcccaaatttaaaaaatattctctaaa-aaagtcaaatgttacaaattacagtgcattgattacacaaatttttataaaaacttact 24733265  T
129 attaaaggtacttaaagagtgc 150  Q
    ||||||||||||||||||||||    
24733266 attaaaggtacttaaagagtgc 24733287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 16459253 - 16459358
Alignment:
45 ttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaa 144  Q
    ||||||||| ||||||||  |||| |||||||||||||| ||||| |||||||    ||| | |  ||||||||||||||||||||||||||| ||||||    
16459253 ttaaatttaaaaaatattcttaaaaaaagtcaaatgttacaaatttcaatgcacgagttacacaatttttcataaaaacttactattaaaggtgcttaaa 16459352  T
145 gagtgc 150  Q
    ||||||    
16459353 gagtgc 16459358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 29217543 - 29217658
Alignment:
30 tactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta 129  Q
    |||| ||||| ||| ||||||||||||||||||| | || || ||||||| ||| ||||||||||||| |||||| | | |||||| |||||| || |||    
29217543 tactttttaaagattttaaatttagaaaatatttcttaaaaaggtcaaatattacaaattccaatgcagtgattacacagattttcgtaaaaaatttcta 29217642  T
130 ttaaaggtacttaaag 145  Q
    ||||| || |||||||    
29217643 ttaaaagtgcttaaag 29217658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 44960504 - 44960578
Alignment:
76 aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc 150  Q
    |||| ||| ||||| |||||||||||||| ||| ||||||||||||| ||||||||||| || ||||||||||||    
44960504 aaatattacaaatttcaatgcattgattacataaattttcataaaaatttactattaaaagtgcttaaagagtgc 44960578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 35210038 - 35209925
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| ||||| ||||||| ||||||||  | || ||||| |||||||| ||||||||||| ||| || | | | ||||| |||||||||| ||||||||    
35210038 tttaaggatctcaaatttaaaaaatattccttaaaaaagttaaatgttacaaattccaatgtattaatcacacaaattttaataaaaacttcctattaaa 35209939  T
135 ggtacttaaagagt 148  Q
    ||| ||||||||||    
35209938 ggttcttaaagagt 35209925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 9200030 - 9200152
Alignment:
28 ggtactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttac 127  Q
    |||||| ||||| ||||  ||||||| ||||||||| | || ||| |||||||||| |||||| |||||| | |||||| | |||||  |||||| || |    
9200030 ggtactctttaaggatcccaaatttaaaaaatatttctcaaaaaaatcaaatgttacaaattcaaatgcactaattatacaaatttttgtaaaaatttgc 9200129  T
128 tattaaaggtacttaaagagtgc 150  Q
     ||||||||| ||||||||||||    
9200130 cattaaaggtgcttaaagagtgc 9200152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 44253819 - 44253920
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||  ||  ||||||||| | | ||||| ||||||||||| | || || || ||||||||    
44253819 aaatttaaaaaatatttttaaaaaaagtcaaatgttataaattttaaatcattgattacacaaatttt-ataaaaacttattgttcaaagtgcttaaaga 44253917  T
147 gtg 149  Q
    |||    
44253918 gtg 44253920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 32959851 - 32959811
Alignment:
110 attttcataaaaacttactattaaaggtacttaaagagtgc 150  Q
    |||||||||||||||||||||||||| | ||||||||||||    
32959851 attttcataaaaacttactattaaagatgcttaaagagtgc 32959811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 40852141 - 40852101
Alignment:
91 caatgcattgattatatatattttcataaaaacttactatt 131  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
40852141 caatgcattgaatatacatattttcataaaaacttactatt 40852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 32572807 - 32572911
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag 145  Q
    |||||||||||||| ||  | || ||||||||||||||||||||||||| ||||  ||| ||| |||||  |||||| |||||||||||||| |||||||    
32572807 taaatttagaaaatgttatttaaaaaagtcaaatgttataaattccaatacattacttacataaatttttgtaaaaaattactattaaaggtgcttaaag 32572906  T
146 agtgc 150  Q
    |||||    
32572907 agtgc 32572911  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 46803528 - 46803630
Alignment:
48 aatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagag 147  Q
    |||||||||| ||||| | |  ||||||||| ||||  |||| |||||||||||||| | |||||||| |||||| |||||||||||||| |||||||||    
46803528 aatttagaaagtattttttataaaagtcaaacgttactaatttcaatgcattgattacacatattttcttaaaaagttactattaaaggtgcttaaagag 46803627  T
148 tgc 150  Q
    |||    
46803628 tgc 46803630  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 46087097 - 46087211
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| |||| |||||||||||||||||  | || ||||| |||||||  | |||| |||||| |||||||| | ||||||||||||||||  |||||||    
46087097 tttaaggatcctaaatttagaaaatattcctcaa-aaagttaaatgtttcacattctaatgcactgattatacagattttcataaaaacttgttattaaa 46087195  T
135 ggtacttaaagagtgc 150  Q
    ||| ||||||||||||    
46087196 ggtgcttaaagagtgc 46087211  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 9534407 - 9534486
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||||||| ||||||||| ||||||| | ||| || | ||||||||||||| ||| |||||||||| |||||||||||    
9534407 aaagtcaaatattataaatttcaatgcactaattttacaaattttcataaaaatttattattaaaggtgcttaaagagtg 9534486  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 27004134 - 27004015
Alignment:
30 tactatttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta 129  Q
    |||| ||||| |||| |||||||| ||||||||| | || ||||| ||||||||| |||| |||||||||||||| | |  ||||| |||||| ||| ||    
27004134 tactttttaaagatcctaaatttaaaaaatattttttaaaaaagttaaatgttatcaatttcaatgcattgattacacaatttttcttaaaaatttatta 27004035  T
130 ttaaaggtacttaaagagtg 149  Q
    |||| | | |||||||||||    
27004034 ttaatgattcttaaagagtg 27004015  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 28441575 - 28441677
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||| |||||||||  ||  ||||| |||||||| |||||||||   ||| |||| | ||||||| ||||||||||||||||||||||  |||||||    
28441575 aaatttaaaaaatatttccaacaaaagttaaatgttacaaattccaaaatattaattacacatatttttataaaaacttactattaaaggtgtttaaaga 28441674  T
147 gtg 149  Q
    |||    
28441675 gtg 28441677  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 2484979 - 2484909
Alignment:
76 aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    |||| ||||||||| ||||||||| | |||||| |||||||||||| |||||||| ||| || ||||||||    
2484979 aaatattataaatttcaatgcattaaatatataaattttcataaaagcttactatcaaaagtccttaaaga 2484909  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 16790350 - 16790292
Alignment:
36 ttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaat 94  Q
    |||| |||| |||||||||||||| ||| | || |||||||||||||||||||||||||    
16790350 ttaaggatcctaaatttagaaaatcttttttaaaaaagtcaaatgttataaattccaat 16790292  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 44971713 - 44971753
Alignment:
110 attttcataaaaacttactattaaaggtacttaaagagtgc 150  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
44971713 attttcgtaaaaacttactattaaaggtgcttaaagagtgc 44971753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 17112741 - 17112791
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaa 120  Q
    |||||||||| || | | ||||||||||||||||| |||||||||||||||    
17112741 aaagtcaaatattttgatttccaatgcattgattacatatattttcataaa 17112791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 26756281 - 26756192
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaag 135  Q
    |||||||| ||||||||  | || |||||||||| ||| ||| || |||||||| ||||   | |||||| |||||||||||||||||||    
26756281 taaatttaaaaaatattatttaaaaaagtcaaatattacaaactctaatgcatttattactcaaattttcgtaaaaacttactattaaag 26756192  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 35438082 - 35438041
Alignment:
88 ttccaatgcattgattatatatattttcataaaaacttacta 129  Q
    |||||||||||||| |||| ||||||||||||||||| ||||    
35438082 ttccaatgcattgaatatacatattttcataaaaactcacta 35438041  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 6170954 - 6170918
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattata 106  Q
    ||||||||||||| ||| |||||||||||||||||||    
6170954 aaagtcaaatgttttaatttccaatgcattgattata 6170918  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 2347429 - 2347530
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    |||||||| |||||||  | || ||| |||||| ||| ||||| |||||||||||||| ||| ||||| ||||||| |||||||||||||| ||||||||    
2347429 aaatttagtaaatattcctcaaaaaaatcaaatattacaaatttcaatgcattgattacataaattttaataaaaatttactattaaaggtgcttaaaga 2347528  T
147 gt 148  Q
    ||    
2347529 gt 2347530  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 36189491 - 36189592
Alignment:
47 aaatttagaaaatatt-tataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaag 145  Q
    |||||||||||||||| |||||| |||| ||||| ||  ||||||||||  |||||||| | ||||||||||||||||||| ||||| |||| |||||||    
36189491 aaatttagaaaatattctataaaaaaagccaaatattgcaaattccaatatattgattacacatattttcataaaaacttattattacaggtgcttaaag 36189590  T
146 ag 147  Q
    ||    
36189591 ag 36189592  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 46726148 - 46726247
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||| ||||||||  | || |||||||||||||| ||||| |||||||||||||| |||  |||||||||||| |||||||||| |||  |||||||    
46726148 aaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacatagtttttcataaaaatttactattaatggtttttaaaga 46726247  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 44543728 - 44543820
Alignment:
41 gatcttaaatttagaaaatatt-tataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaa 133  Q
    ||||| ||||||| |||||||| |||||| || |||||||||||||||||| ||||||||||||| | || |||| ||||||| || |||||||    
44543728 gatctcaaatttaaaaaatattctataaa-aatgtcaaatgttataaattcaaatgcattgattacacatttttttataaaaaatttctattaa 44543820  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 2959680 - 2959568
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||| |||| |||||| | ||||||||| |  | ||||| ||||||||||||||  ||||||||||||| |||  |||||||||||| ||| |||||||    
2959680 tttaaggatcataaattaaaaaaatattttttgaaaaagttaaatgttataaattttaatgcattgattacataatttttcataaaaatttattattaaa 2959581  T
135 ggtacttaaagag 147  Q
     ||  ||||||||    
2959580 agtgtttaaagag 2959568  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 19559997 - 19559933
Alignment:
85 aaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    ||||| ||| |||||||||| |||| || |||||||||||||||||||| ||| |||||||||||    
19559997 aaatttcaacgcattgattacatattttctcataaaaacttactattaatggttcttaaagagtg 19559933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 36939471 - 36939562
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactta 126  Q
    ||||| ||||||||||||| ||||||||  | || |||||||||||||| ||||| || |||||| |||| | | |||| ||||||||||||    
36939471 tttaaggatcttaaatttaaaaaatattcctcaaaaaagtcaaatgttacaaatttcagtgcattaattacacaaatttacataaaaactta 36939562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 39156055 - 39156131
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    |||||||||| || |||||| ||||||| | | |||||  ||||||||||||| ||||||||||||||  |||||||    
39156055 aaagtcaaatattttaaatttcaatgcacttaatatatggattttcataaaaatttactattaaaggtctttaaaga 39156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 4133857 - 4133810
Alignment:
74 tcaaatgttataaattccaatgcattgattatatatattttcataaaa 121  Q
    |||||||||| ||||| |||||||||||||||| | ||||||||||||    
4133857 tcaaatgttacaaatttcaatgcattgattataaagattttcataaaa 4133810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 28252022 - 28251984
Alignment:
91 caatgcattgattatatatattttcataaaaacttacta 129  Q
    |||||||||||||||||| ||||||||||| ||||||||    
28252022 caatgcattgattatatacattttcataaatacttacta 28251984  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 4806568 - 4806495
Alignment:
76 aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||||| ||||| |||| ||||||||| | |||||||||||||||||||||||||| ||| |||||||||||    
4806568 aaatgttacaaatttcaatacattgattacacatattttcataaaaacttactattaatggttcttaaagagtg 4806495  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 15588667 - 15588769
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||||| ||||||||  | || ||| | |||||||| ||||| |||||||||||||| |||  |||||||||||||||||| |||| | | ||||||||    
15588667 aaatttataaaatattctttaaaaaaattaaatgttacaaatttcaatgcattgattacataatttttcataaaaacttactgttaatgattcttaaaga 15588766  T
147 gtg 149  Q
    |||    
15588767 gtg 15588769  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 6555133 - 6555050
Alignment:
46 taaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta 129  Q
    |||||||||||| ||||  | || |||||||||||||||||||| ||||||||| |||| |   ||||| ||||||||||||||    
6555133 taaatttagaaagtattccttaaaaaagtcaaatgttataaatttcaatgcattaattacactgatttttataaaaacttacta 6555050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 31702789 - 31702732
Alignment:
92 aatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    ||||||||||||| | ||||||| ||||||| |||||||| ||||  |||||||||||    
31702789 aatgcattgattacacatatttttataaaaagttactatttaaggatcttaaagagtg 31702732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 24173181 - 24173280
Alignment:
35 tttaacgatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaa 134  Q
    ||||||||||| ||||||||||||||||| |    ||| | |||||||| ||||||||||||||| |||| | ||||||||| |||| ||||||||||||    
24173181 tttaacgatctcaaatttagaaaatattttttttaaaaattaaatgttacaaattccaatgcattaattacaaatattttcaaaaaaccttactattaaa 24173280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 2689349 - 2689269
Alignment:
41 gatcttaaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaa 122  Q
    ||||||||||||| ||||||||| | || ||| ||||||||||||||||| ||||  ||||||||| ||||||| |||||||    
2689349 gatcttaaatttaaaaaatattttttaaaaaa-tcaaatgttataaattcaaatgttttgattatacatatttttataaaaa 2689269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 31558093 - 31558024
Alignment:
74 tcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaa 143  Q
    |||||||||| ||||| |||| |||| |||||||| ||||||||||||| ||| |||||||||| |||||    
31558093 tcaaatgttacaaatttcaatacatttattatataaattttcataaaaatttattattaaaggtgcttaa 31558024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 231334 - 231408
Alignment:
76 aaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtgc 150  Q
    ||||| ||||||||  ||||||||||||||| |  ||||||| ||||||||||||||| | | ||||||||||||    
231334 aaatgctataaattttaatgcattgattataaagtttttcattaaaacttactattaatgattcttaaagagtgc 231408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 41583578 - 41583654
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaaga 146  Q
    ||||| |||| ||| ||||||||||||||||| || | | ||||||||||||| |||||||| ||| | ||||||||    
41583578 aaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 41583654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 2827658 - 2827579
Alignment:
47 aaatttagaaaatatttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaactta 126  Q
    ||||||||||||||||  | || |||||||||||||| || || |||||||||||||  | | ||||| |||||||||||    
2827658 aaatttagaaaatattatttaagaaagtcaaatgttacaagtttcaatgcattgattgcacaaattttaataaaaactta 2827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 8453890 - 8453949
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttacta 129  Q
    |||||||||||||| || ||| ||||||||||||| |||  |||| ||||||||||||||    
8453890 aaagtcaaatgttacaatttctaatgcattgattacatacgtttttataaaaacttacta 8453949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 12198230 - 12198309
Alignment:
70 aaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttactattaaaggtacttaaagagtg 149  Q
    |||||||||| ||| ||||| |||||| || |||  | ||||||||||||||| ||||||||||  || |||||||||||    
12198230 aaagtcaaatattacaaatttcaatgctttaattgcacatattttcataaaaatttactattaattgtccttaaagagtg 12198309  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 31889641 - 31889709
Alignment:
60 atttataaataaagtcaaatgttataaattccaatgcattgattatatatattttcataaaaacttact 128  Q
    ||||||||| ||||| |||| ||  || ||| ||||||||||||| | ||||||||||||||| |||||    
31889641 atttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

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