View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_202 (Length: 310)

Name: NF8981_low_202
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_202
NF8981_low_202
[»] chr1 (2 HSPs)
chr1 (1-116)||(35712953-35713068)
chr1 (20-116)||(30232219-30232313)
[»] chr3 (2 HSPs)
chr3 (1-115)||(46652346-46652460)
chr3 (20-116)||(34826111-34826207)
[»] chr8 (2 HSPs)
chr8 (1-116)||(34314566-34314681)
chr8 (20-116)||(26521421-26521517)
[»] chr2 (6 HSPs)
chr2 (1-110)||(29043028-29043137)
chr2 (1-107)||(32601860-32601964)
chr2 (59-116)||(45412931-45412988)
chr2 (1-57)||(45412967-45413023)
chr2 (109-140)||(29042981-29043012)
chr2 (109-140)||(45412886-45412917)
[»] chr7 (2 HSPs)
chr7 (1-116)||(47578038-47578153)
chr7 (16-116)||(7848677-7848777)
[»] chr5 (4 HSPs)
chr5 (1-116)||(27490679-27490794)
chr5 (6-52)||(24242673-24242719)
chr5 (59-116)||(24242632-24242689)
chr5 (109-140)||(24242587-24242618)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 35712953 - 35713068
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  35712953 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagaggattttcgaattttgaaagagaggatttttgaatctgggtttttaattcttcat 35713052  T
Q  101 acatggaattgatttt 116  Q
    ||||||||||||||||    
T  35713053 acatggaattgatttt 35713068  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 30232313 - 30232219
Alignment:
Q  20 caacacaatcaagaaattgaaagagacgattttcgaattttga----aagagagaatttttgaatcggggtttttgattcttcatacatggaattgattt 115  Q
    |||||||||||||||||||||||| |  ||||| |||||||||    ||||||||||||| |||      ||||| ||||||||||||||||||| ||||    
T  30232313 caacacaatcaagaaattgaaagatagaatttttgaattttgaaagaaagagagaattttcgaa------ttttttattcttcatacatggaatttattt 30232220  T

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Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 46652460 - 46652346
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  46652460 tcaagaaacaacaacacaacaacacaatcaagaaattgaaagagaggattttcgaattttgaaagagaggatttttgaatctgggtttttgattcttcat 46652361  T
Q  101 acatggaattgattt 115  Q
    |||||||||||||||    
T  46652360 acatggaattgattt 46652346  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 34826111 - 34826207
Alignment:
Q  20 caacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcatacatggaattgatttt 116  Q
    ||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  34826111 caacacagtcaagaaattgaaaaagagaattttcgaattttgaaagagagaatttttgaatcccgatttttgattcttcatacatggaattgatttt 34826207  T

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Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34314681 - 34314566
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34314681 tcaagaaacagcaacacaagaacacaatcaagaaattgaaagagagaattttcgaattttgaaagagaggatttttgaatctgggtttttgattcttcat 34314582  T
Q  101 acatggaattgatttt 116  Q
    ||||||||||||||||    
T  34314581 acatggaattgatttt 34314566  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 26521517 - 26521421
Alignment:
Q  20 caacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcatacatggaattgatttt 116  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26521517 caacacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatatgggtttttgattcttcatacatggaattgatttt 26521421  T

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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29043137 - 29043028
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  29043137 tcaagaaacaacaacacaacaacacaatcaagaaattgaaagagaggattttcgaattttgaaagacagaatttttgaatctgggtttttgattcttcat 29043038  T
Q  101 acatggaatt 110  Q
    ||||||||||    
T  29043037 acatggaatt 29043028  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 32601964 - 32601860
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    ||||||||||||||| ||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32601964 tcaagaaacagcaacccaacaacag--tcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatctgggtttttgattcttcat 32601867  T
Q  101 acatgga 107  Q
     ||||||    
T  32601866 ccatgga 32601860  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 45412988 - 45412931
Alignment:
Q  59 ttgaaagagagaatttttgaatcggggtttttgattcttcatacatggaattgatttt 116  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  45412988 ttgaaagagaggatttttgaatccgggtttttgattcttcatacatggaattgatttt 45412931  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45413023 - 45412967
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaat 57  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  45413023 tcaagaaacggcaacacaacaacacaatctagaaattgaaagagaggatttttgaat 45412967  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 29043012 - 29042981
Alignment:
Q  109 ttgattttcgattggaagaggaagcaatctgg 140  Q
    ||||||||||||||||||||||||||||||||    
T  29043012 ttgattttcgattggaagaggaagcaatctgg 29042981  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 45412917 - 45412886
Alignment:
Q  109 ttgattttcgattggaagaggaagcaatctgg 140  Q
    ||||||||||||||||||||||||||||||||    
T  45412917 ttgattttcgattggaagaggaagcaatctgg 45412886  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 47578153 - 47578038
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||  | ||||||||||||||||    
T  47578153 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagagaattttcgaattttgaaagagaggatttttgaatatgagtttttgattcttcat 47578054  T
Q  101 acatggaattgatttt 116  Q
    ||||||||||||||||    
T  47578053 acatggaattgatttt 47578038  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 7848777 - 7848677
Alignment:
Q  16 acaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcatacatggaattgattt 115  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||    
T  7848777 acaacaacacaatcaagaaattgaaagagaggattttcaaattttgaaagagaggatttttgaatttgggtttttgattcatcatacatggaattgattt 7848678  T
Q  116 t 116  Q
    |    
T  7848677 t 7848677  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27490794 - 27490679
Alignment:
Q  1 tcaagaaacagcaacacaacaacacaatcaagaaattgaaagagacgattttcgaattttgaaagagagaatttttgaatcggggtttttgattcttcat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||    
T  27490794 tcaagaaacaacaacacaacaacacaatcaagaaattgaaagagaggattttcaaattttgaaagagaggatttttgaatctgagtttttgattcttcat 27490695  T
Q  101 acatggaattgatttt 116  Q
    ||||||| ||||||||    
T  27490694 acatggatttgatttt 27490679  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 24242719 - 24242673
Alignment:
Q  6 aaacagcaacacaacaacacaatcaagaaattgaaagagacgatttt 52  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24242719 aaacggcaacacaacaacacaatcaagaaattgaaagagaggatttt 24242673  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 24242689 - 24242632
Alignment:
Q  59 ttgaaagagagaatttttgaatcggggtttttg-attcttcatacatggaattgatttt 116  Q
    ||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  24242689 ttgaaagagaggatttt-gaatctgggtttttgtattcttcatacatggaattgatttt 24242632  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 24242618 - 24242587
Alignment:
Q  109 ttgattttcgattggaagaggaagcaatctgg 140  Q
    ||||||||||||||||||||||||||||||||    
T  24242618 ttgattttcgattggaagaggaagcaatctgg 24242587  T

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