View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_low_204 (Length: 306)
Name: NF8981_low_204
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_204 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 16864943 - 16864672
Alignment:
| Q |
14 |
attattctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgtt |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16864943 |
attattctcatttatatcatcgagaggaggcatctcaggatcaatttgatttacttgctcatcagttgtgaattctataacatcatcatcaattagtgtt |
16864844 |
T |
|
| Q |
114 |
gaacttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcat |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16864843 |
gaacttgattgagtgttttcattaccattctagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcat |
16864744 |
T |
|
| Q |
214 |
gtagcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttct |
288 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16864743 |
gtagcttataagctttttattcttcactcaaaccaagcagaatacacctag---tactcttatcatctaacttct |
16864672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 20543870 - 20543659
Alignment:
| Q |
48 |
tcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagt |
147 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20543870 |
tcaggttcagtttgatttactggctcatcagttgtaaattctatcacatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccagt |
20543771 |
T |
|
| Q |
148 |
tccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaacc |
247 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||| |||||||||||||| || || |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
20543770 |
tccatccttgtgtttcttcaaatacaacatccctgctaattaccactttcttattcttggggtcatacaacttataagcttttgattcttcactcaaacc |
20543671 |
T |
|
| Q |
248 |
aagcagaataca |
259 |
Q |
| |
|
||| |||||||| |
|
|
| T |
20543670 |
aagtagaataca |
20543659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 40611401 - 40611644
Alignment:
| Q |
17 |
attctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagtt-gtgaattctataacatcatcatcaattagtgttga |
115 |
Q |
| |
|
|||| ||||| ||||||||| | || ||| ||||| ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| || | ||||| |
|
|
| T |
40611401 |
attcccatttgtatcatcaataccagtcatttcaggttcactttgatttactggctcatcagtttgtgaattctatcacatcatcatctatcaaggttga |
40611500 |
T |
|
| Q |
116 |
acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||| |||| |||||||||||||| || || |||| |
|
|
| T |
40611501 |
acttgattgagtgttttcattcccattccagttccatccttgtgtttcttcaaaatcaaaatccctgctaattaccactttcttatttttggggtcatac |
40611600 |
T |
|
| Q |
216 |
agcttataagcttttgattcttcactcaaaccaagcagaataca |
259 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
40611601 |
aacttataagcttttgattcttcacttaaaccaagtagaataca |
40611644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 288
Target Start/End: Complemental strand, 3037497 - 3037328
Alignment:
| Q |
116 |
acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt |
215 |
Q |
| |
|
||||| ||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| | |
|
|
| T |
3037497 |
acttgtttgtgtgttttcgtcagcattcaagttccatccttgtgattcttcaaatataacatccctgctaatcaaaactttcttgctcttaggatcatat |
3037398 |
T |
|
| Q |
216 |
agcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttct |
288 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | | ||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
3037397 |
agcttgtaagcttttgattcttcacttaaacctaaaaaaatacacttag---tactcttatcatccaacttct |
3037328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 20530581 - 20530357
Alignment:
| Q |
17 |
attctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaa |
116 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| |||||| | || ||| | |||| ||||| ||||||| ||||| ||||||||||||| |||| || | |
|
|
| T |
20530581 |
attctcacttatatcttcaagcttaggcatcttaggatctacttcattcactggcacatcatttgtgaactctatcacatcatcatcaactagtatttta |
20530482 |
T |
|
| Q |
117 |
cttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgta |
216 |
Q |
| |
|
|||| || | |||| | ||||||||||||| |||||||||||||| ||||| ||||| | | ||||| | |||||| | ||||| |||| || |
|
|
| T |
20530481 |
cttgcttatgagtttgttgcagcattccagttccaaccttgtgattcttccaatatgacatctttacttatcacaagtttcttgcttttagggtcatata |
20530382 |
T |
|
| Q |
217 |
gcttataagcttttgattcttcact |
241 |
Q |
| |
|
||||||||||||| |||| |||||| |
|
|
| T |
20530381 |
gcttataagctttagattattcact |
20530357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University