View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_208 (Length: 305)
Name: NF8981_low_208
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_208 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 2831521 - 2831229
Alignment:
| Q |
13 |
atcattatcttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggt |
112 |
Q |
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| T |
2831521 |
atcattatcttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggt |
2831422 |
T |
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| Q |
113 |
cacagttggaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaa |
212 |
Q |
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| T |
2831421 |
cacagttggaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaa |
2831322 |
T |
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| Q |
213 |
aaagatgcaagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaaaatatgaatatgtctaaacattc |
305 |
Q |
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| T |
2831321 |
aaagatgcaagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaaaatatgaatatgtctaaacattc |
2831229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 3630 - 3895
Alignment:
| Q |
21 |
cttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttg |
120 |
Q |
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| T |
3630 |
cttgaaagaggaaagagatacactcaagatagagtgtgaaaacctcaaatcttttcgcaaacgaagggatgaggctaaagtgagtagcagatcacaattg |
3729 |
T |
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| Q |
121 |
gaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgc |
220 |
Q |
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| T |
3730 |
gaaggcggggatcttcatactcttattgaagaaatcagacaagaattgaatcacgagaaggacatgaatgcaaatctcagactacagttaaataagacac |
3829 |
T |
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| Q |
221 |
aagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaaaata |
286 |
Q |
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| T |
3830 |
aggaatcaaatgctgaactagttcttgctgttcaggacctcgacgcaatgttagagcagaaaaata |
3895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 40799002 - 40799267
Alignment:
| Q |
21 |
cttgaaagatgaaagggacgcactcaagacagaatgtgacaatgtcaggtctttccacaaacgcatggacgatgccaaagtgagaaacaggtcacagttg |
120 |
Q |
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| T |
40799002 |
cttgaaagaggaaagagatacactcaagatagagtgtgaaaacctcaaatcttttcgcaaacgaagggatgaggctaaagtgagtagcagatcacaattg |
40799101 |
T |
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| Q |
121 |
gaaagtggagatcatcatgcctttgtcgaagaaatcagacaagaattgaattatgagaaagacacgaatgcaaatctccgattacagttaaaaaagatgc |
220 |
Q |
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| T |
40799102 |
gaaggcggggatcttcatactcttattgaagaaatcagacaagaattgaatcacgagaaggacatgaatgcaaatctcagactacagttaaataagacac |
40799201 |
T |
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| Q |
221 |
aagaatcaaatgctgaattggttcttgccgtgcaggacctggaagagatgttggagcagaaaaata |
286 |
Q |
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| T |
40799202 |
aggaatcaaatgctgaactagttcttgctgttcaggacctcgacgcaatgttagagcagaaaaata |
40799267 |
T |
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