View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_low_214 (Length: 302)

Name: NF8981_low_214
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_low_214
NF8981_low_214
[»] chr7 (12 HSPs)
chr7 (3-296)||(44803153-44803441)
chr7 (237-298)||(20543967-20544028)
chr7 (238-296)||(11975038-11975096)
chr7 (237-295)||(22948854-22948912)
chr7 (237-295)||(32092505-32092563)
chr7 (237-293)||(11974720-11974776)
chr7 (237-292)||(17075596-17075651)
chr7 (237-292)||(28838408-28838463)
chr7 (237-270)||(16755634-16755667)
chr7 (244-293)||(23548670-23548719)
chr7 (237-289)||(28854733-28854785)
chr7 (237-293)||(32092284-32092340)
[»] chr4 (16 HSPs)
chr4 (239-298)||(26168050-26168109)
chr4 (237-292)||(29691891-29691946)
chr4 (237-296)||(30047991-30048050)
chr4 (237-296)||(30062332-30062391)
chr4 (237-292)||(34129279-34129334)
chr4 (237-298)||(30608301-30608362)
chr4 (237-298)||(35166839-35166900)
chr4 (237-292)||(41510124-41510179)
chr4 (237-295)||(29691581-29691639)
chr4 (237-295)||(52398736-52398794)
chr4 (242-298)||(51906792-51906848)
chr4 (237-292)||(3296599-3296654)
chr4 (237-292)||(30608612-30608667)
chr4 (249-291)||(34397716-34397758)
chr4 (237-298)||(1791521-1791582)
chr4 (237-293)||(34129050-34129106)
[»] chr1 (14 HSPs)
chr1 (237-299)||(48155029-48155091)
chr1 (237-298)||(6751326-6751387)
chr1 (237-298)||(50359412-50359473)
chr1 (237-292)||(18180257-18180312)
chr1 (237-298)||(5683534-5683595)
chr1 (237-298)||(9880763-9880824)
chr1 (237-293)||(19895778-19895834)
chr1 (237-292)||(48155258-48155313)
chr1 (237-298)||(31436356-31436417)
chr1 (237-292)||(9880540-9880595)
chr1 (237-295)||(18179935-18179993)
chr1 (237-274)||(3591334-3591371)
chr1 (237-293)||(19895456-19895512)
chr1 (244-292)||(47541803-47541851)
[»] chr8 (12 HSPs)
chr8 (237-298)||(12489284-12489345)
chr8 (237-292)||(17914253-17914308)
chr8 (237-298)||(17915480-17915541)
chr8 (237-298)||(9800095-9800156)
chr8 (237-298)||(26997842-26997903)
chr8 (237-292)||(6297518-6297573)
chr8 (237-292)||(6297841-6297896)
chr8 (242-293)||(10047856-10047907)
chr8 (237-288)||(21006105-21006156)
chr8 (237-292)||(39234892-39234947)
chr8 (237-290)||(13315258-13315311)
chr8 (237-289)||(7344838-7344890)
[»] chr5 (13 HSPs)
chr5 (237-292)||(3406839-3406894)
chr5 (237-292)||(16284330-16284385)
chr5 (237-289)||(18999622-18999674)
chr5 (237-292)||(8750339-8750394)
chr5 (237-298)||(3935667-3935728)
chr5 (237-298)||(31588319-31588380)
chr5 (237-298)||(35373504-35373565)
chr5 (237-293)||(87239-87295)
chr5 (237-289)||(3406515-3406567)
chr5 (237-293)||(8648043-8648099)
chr5 (237-292)||(18999422-18999477)
chr5 (237-292)||(35383296-35383351)
chr5 (238-296)||(3935447-3935505)
[»] scaffold0009 (2 HSPs)
scaffold0009 (237-298)||(108095-108156)
scaffold0009 (244-292)||(107785-107833)
[»] chr6 (4 HSPs)
chr6 (237-298)||(17157602-17157663)
chr6 (237-298)||(14712979-14713040)
chr6 (237-298)||(21113085-21113146)
chr6 (237-289)||(1869507-1869559)
[»] chr3 (13 HSPs)
chr3 (242-291)||(43933708-43933757)
chr3 (237-293)||(13637531-13637587)
chr3 (237-297)||(34743444-34743504)
chr3 (237-292)||(43933496-43933551)
chr3 (237-292)||(44504148-44504203)
chr3 (237-296)||(51471391-51471450)
chr3 (237-298)||(22814352-22814413)
chr3 (237-298)||(50732281-50732342)
chr3 (237-298)||(50780513-50780574)
chr3 (237-292)||(13637759-13637814)
chr3 (250-292)||(26741283-26741325)
chr3 (237-293)||(27013465-27013521)
chr3 (237-289)||(44504368-44504420)
[»] chr2 (12 HSPs)
chr2 (237-292)||(2606635-2606690)
chr2 (241-292)||(32114225-32114276)
chr2 (237-298)||(10706624-10706685)
chr2 (237-293)||(2517469-2517525)
chr2 (237-293)||(39729584-39729640)
chr2 (237-292)||(2191273-2191328)
chr2 (237-296)||(21182363-21182422)
chr2 (237-292)||(21216979-21217034)
chr2 (237-292)||(21265368-21265423)
chr2 (237-292)||(24093535-24093590)
chr2 (237-292)||(32114450-32114505)
chr2 (237-297)||(3691139-3691199)
[»] scaffold0063 (1 HSPs)
scaffold0063 (237-298)||(34848-34909)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 44803153 - 44803441
Alignment:
Q  3 aaacgaaattatttgtttcaagataaagagtgttcaaagaaattatatatgtttcaagttagatggaaattagacagatctaacttgcacgtaacggaga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44803153 aaacgaaattatttgtttcaagataaagagtgttcaaagaaattatatatgtttcaagttagatggaaattagacagatctaacttgcacgtagcggaga 44803252  T
Q  103 tgatgttaggtacattggaagatgcatgttactttgaacaattgtcctatcacaacttaactcaagacaacaatatagatatagggttaaatatttaatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     |||    
T  44803253 tgatgttaggtacattggaagatgcatgttactttgaacaattgtcctatcacaacttaactaaagacaacaatatagatatagggttaaat-----att 44803347  T
Q  203 tgtttagtcctcgcattttgggctataggccctaattttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  44803348 tgtttagtcctcacattttgggctataggccctaattttattaaatatttttaaaatccttatattttatctctgctatcaaaattagtctctg 44803441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 20543967 - 20544028
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| |||||||||||||||||||||||||  | ||||||||||||| ||||||    
T  20543967 atttcattaaatttttttaaaatcctcatattttatctccgttatcaaaattagtttctgct 20544028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 11975096 - 11975038
Alignment:
Q  238 ttttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    ||||||||||| ||||||||||||||| ||||||| |  | ||||||||||||||||||    
T  11975096 ttttattaaatgtttttaaaatcctcacattttatttccgttatcaaaattagtctctg 11975038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 22948912 - 22948854
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctct 295  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||||||    
T  22948912 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctct 22948854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 32092563 - 32092505
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctct 295  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||||||    
T  32092563 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctct 32092505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 11974720 - 11974776
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||||    
T  11974720 atttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtct 11974776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 17075651 - 17075596
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||   |||||||||||||||    
T  17075651 atttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagtc 17075596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 28838408 - 28838463
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  28838408 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 28838463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 16755667 - 16755634
Alignment:
Q  237 attttattaaatatttttaaaatcctcatatttt 270  Q
    |||| |||||||||||||||||||||||||||||    
T  16755667 atttcattaaatatttttaaaatcctcatatttt 16755634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 23548670 - 23548719
Alignment:
Q  244 taaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    ||||| |||||||||| |||| ||||||||| || |||||||||||||||    
T  23548670 taaatgtttttaaaatactcacattttatctctgttatcaaaattagtct 23548719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 28854733 - 28854785
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatta 289  Q
    |||||||||||| ||||||||||||||| ||||||| |  | |||||||||||    
T  28854733 attttattaaatgtttttaaaatcctcacattttatttcagttatcaaaatta 28854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 32092284 - 32092340
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||| ||||||||||||||| ||||| | | || |||||||||||||||    
T  32092284 atttcattaaatgtttttaaaatcctcacattttgtgtttgttatcaaaattagtct 32092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 26168050 - 26168109
Alignment:
Q  239 tttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  26168050 tttattaaatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgct 26168109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 29691946 - 29691891
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  29691946 atttcattaaatatttttaaaatcctcacattttatctctgttatcaaaattagtc 29691891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 30048050 - 30047991
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    |||| |||||||||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  30048050 atttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctg 30047991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 30062391 - 30062332
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    |||| |||||||||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  30062391 atttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctg 30062332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 34129334 - 34129279
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  34129334 atttcattaaatatttttaaaatcctcacattttatctctgttatcaaaattagtc 34129279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 30608301 - 30608362
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| |||| |||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  30608301 atttcattatatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgct 30608362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 35166900 - 35166839
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  35166900 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgct 35166839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 41510124 - 41510179
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||||||||||| |||||||||||||||||||||    ||||||||||||||    
T  41510124 attttattaaatatttctaaaatcctcatattttatctcccttatcaaaattagtc 41510179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 29691581 - 29691639
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctct 295  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||||||    
T  29691581 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctct 29691639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 52398736 - 52398794
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctct 295  Q
    ||||||||||||||||||||||| || ||||||||| |  | |||||||||||||||||    
T  52398736 attttattaaatatttttaaaattcttatattttattttcgttatcaaaattagtctct 52398794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 51906848 - 51906792
Alignment:
Q  242 attaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    ||||||| ||||||||||||||| |||||||||  | ||||||||||||| ||||||    
T  51906848 attaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtttctgct 51906792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 3296599 - 3296654
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  3296599 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 3296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 30608667 - 30608612
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  30608667 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 30608612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 34397716 - 34397758
Alignment:
Q  249 atttttaaaatcctcatattttatctatgctatcaaaattagt 291  Q
    ||||||||||||||||||||||||||  | |||||||||||||    
T  34397716 atttttaaaatcctcatattttatcttcgttatcaaaattagt 34397758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 1791582 - 1791521
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||||||||||| ||||||||||| | | |||||||||  | ||| ||||||||||||||||    
T  1791582 attttattaaatgtttttaaaatctttacattttatctccgttattaaaattagtctctgct 1791521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 34129050 - 34129106
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||||||||||  |||||||||| ||||||||||||||  | ||||||| |||||||    
T  34129050 attttattaaacgtttttaaaattctcatattttatcttcgttatcaaagttagtct 34129106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 48155029 - 48155091
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgctc 299  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||| |||||||||    
T  48155029 attttattaaatgtttttaaaatcctcatattttatctccgatatcaaaattaatctctgctc 48155091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 6751387 - 6751326
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  6751387 atttcattaaatttttttaaaatcctcacattttatctttgttatcaaaattagtctctgct 6751326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 50359473 - 50359412
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  50359473 atttcattaaatgtttttaaaatcctcacattttatctctgttatcaaaattagtctctgct 50359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 18180312 - 18180257
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||||||    
T  18180312 attttattaaatgtttttaaaatcctcatattttatctccgttatcaaaattagtc 18180257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 5683595 - 5683534
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| |||||||||||||||||||||| ||||||||||  | |||||||||||||| |||||    
T  5683595 atttcattaaatatttttaaaatcctcgtattttatctccggtatcaaaattagtcactgct 5683534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 9880824 - 9880763
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||||||||||| |||||||||| |||| ||||||||| || |||||||||||||| |||||    
T  9880824 attttattaaatgtttttaaaattctcacattttatctctgttatcaaaattagtccctgct 9880763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 19895834 - 19895778
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||||||||||| |||||||||| ||||||||||||||  | |||||||||||||||    
T  19895834 attttattaaatgtttttaaaattctcatattttatcttcgttatcaaaattagtct 19895778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 48155313 - 48155258
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||| ||| |||||||||||| ||||||||||||||    
T  48155313 atttcattaaatgtttttaaaatcttcacattttatctatgttatcaaaattagtc 48155258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 31436417 - 31436356
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||||||||||| ||||||||||  ||| |||||||||  | ||||||||||||||||||||    
T  31436417 attttattaaatgtttttaaaattatcacattttatctccgttatcaaaattagtctctgct 31436356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 9880540 - 9880595
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  9880540 atttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtc 9880595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 18179935 - 18179993
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctct 295  Q
    |||| ||||| | ||||||||||||||| |||||||||  | |||||||||||||||||    
T  18179935 atttcattaattgtttttaaaatcctcacattttatctccgttatcaaaattagtctct 18179993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 3591371 - 3591334
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatct 274  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  3591371 attttattaaatgtttttaaaatcctcacattttatct 3591334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 19895456 - 19895512
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||| ||||||||| ||||| |||||||||  | |||||||||||||||    
T  19895456 atttaattaaatgtttttaaaaccctcacattttatctccgttatcaaaattagtct 19895512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 47541851 - 47541803
Alignment:
Q  244 taaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    ||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  47541851 taaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 47541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 12489284 - 12489345
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||    
T  12489284 atttcattaaatatttttaaaatcctcgcattttatctttgttatcaaaattagtctctgct 12489345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 17914253 - 17914308
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||    
T  17914253 attttattaaatgtttttaaaatcctcacattttatctctgttatcaaaattagtc 17914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 17915541 - 17915480
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||||||||||| ||||| ||||||||| ||||||||| || ||||||||||||||| ||||    
T  17915541 attttattaaatgttttttaaatcctcacattttatctctgttatcaaaattagtctttgct 17915480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 9800095 - 9800156
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||||||||||| ||||||||||||||| |||| ||||  | ||||||||||||||| ||||    
T  9800095 attttattaaatgtttttaaaatcctcacatttcatctccgttatcaaaattagtctttgct 9800156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 26997903 - 26997842
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||| ||||||||||||||||| |||||||||  | |||||||||||||| |||||    
T  26997903 atttcattaattatttttaaaatcctcacattttatctccgttatcaaaattagtccctgct 26997842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 6297518 - 6297573
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| ||||| ||| || ||||||||||||||    
T  6297518 atttcattaaatgtttttaaaatcctcacattttctctctgttatcaaaattagtc 6297573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 6297896 - 6297841
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  6297896 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 6297841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 10047907 - 10047856
Alignment:
Q  242 attaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    ||||||||||||||||||  |||||||||||||  | |||||||||||||||    
T  10047907 attaaatatttttaaaattttcatattttatctccgttatcaaaattagtct 10047856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 21006156 - 21006105
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatt 288  Q
    |||||||||||| ||||||||||||||| |||||||||  | ||||||||||    
T  21006156 attttattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 21006105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 39234892 - 39234947
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    ||||||||||||||||| ||||| |||| |||||||||  | ||||||||||||||    
T  39234892 attttattaaatattttaaaaattctcacattttatctcagttatcaaaattagtc 39234947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 13315258 - 13315311
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattag 290  Q
    |||| ||||||| ||||||||||| ||| ||||||||| || ||||||||||||    
T  13315258 atttcattaaatgtttttaaaatcatcacattttatctctgttatcaaaattag 13315311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 7344890 - 7344838
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatta 289  Q
    ||||||||| || ||||||||||||||||||||||| |  | |||||||||||    
T  7344890 attttattatatgtttttaaaatcctcatattttatgtccgttatcaaaatta 7344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 3406894 - 3406839
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    ||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||    
T  3406894 attttattaaatatttttaaaattctcacattttatctctgttatcaaaattagtc 3406839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 16284330 - 16284385
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||||||| |||||||||||||||||||||||||  | ||||||||||||||    
T  16284330 attttattaaatgtttttaaaatcctcatattttatctccgttatcaaaattagtc 16284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 18999674 - 18999622
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatta 289  Q
    |||| ||||||||||||||||||||||| ||||||||| || |||||||||||    
T  18999674 atttcattaaatatttttaaaatcctcacattttatctttgttatcaaaatta 18999622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 8750394 - 8750339
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||||||| | |||||||||||||||||||||||  | ||||||||||||||    
T  8750394 attttattaaatgtgtttaaaatcctcatattttatctccgttatcaaaattagtc 8750339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 3935728 - 3935667
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||| | ||||||||||||||| ||||||||| || ||| ||||||||||||||||    
T  3935728 atttcattaattgtttttaaaatcctcacattttatctttgttattaaaattagtctctgct 3935667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 31588380 - 31588319
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||| | |||||||||  | |||||||||||||| |||||    
T  31588380 atttcattaaatatttttaaaatcctaacattttatctccgttatcaaaattagtccctgct 31588319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 35373504 - 35373565
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||||||||||||||   | ||| |||||||||| |||||    
T  35373504 atttcattaaatatttttaaaatcctcatattttatccccgttattaaaattagtcactgct 35373565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 87295 - 87239
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||||    
T  87295 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtct 87239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 3406515 - 3406567
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatta 289  Q
    |||| ||||||| ||||||||||||| ||||||||||| || |||||||||||    
T  3406515 atttcattaaatgtttttaaaatccttatattttatctctgttatcaaaatta 3406567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 8648099 - 8648043
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||||||||||||||||||| ||||| |||  | |||||||||||||||    
T  8648099 atttcattaaatatttttaaaatcctcacattttttctccgttatcaaaattagtct 8648043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 18999422 - 18999477
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||||||||||||||||||  |||||||||  | ||||||||||||||    
T  18999422 atttcattaaatatttttaaaatcctctcattttatctccgttatcaaaattagtc 18999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 35383296 - 35383351
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||||||||||||   | ||||||||||||||    
T  35383296 atttcattaaatgtttttaaaatcctcatattttatccccgttatcaaaattagtc 35383351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3935447 - 3935505
Alignment:
Q  238 ttttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    ||||||||||| ||||||||||||||| |||||||||    |||||| |||||||||||    
T  3935447 ttttattaaatgtttttaaaatcctcacattttatctccattatcaatattagtctctg 3935505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 108156 - 108095
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  108156 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgct 108095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 107785 - 107833
Alignment:
Q  244 taaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    ||||||||||||||||||||| |||||||||  | |||||||| |||||    
T  107785 taaatatttttaaaatcctcacattttatctccgttatcaaaaatagtc 107833  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 17157602 - 17157663
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||||| ||||||||| |  |||||||||||||| |||||    
T  17157602 atttcattaaatatttttaaaatcctcacattttatctctattatcaaaattagtcactgct 17157663  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 14713040 - 14712979
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| ||||  |||| |||||||||||||| || ||||||||||||||||||||    
T  14713040 atttcattaaatgttttagaaatgctcatattttatctctgttatcaaaattagtctctgct 14712979  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 21113085 - 21113146
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| |||||||||| |||| |||||||||    ||||||||||||||||||||    
T  21113085 atttcattaaatgtttttaaaattctcacattttatctcctttatcaaaattagtctctgct 21113146  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 1869507 - 1869559
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatta 289  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||    
T  1869507 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 1869559  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 43933757 - 43933708
Alignment:
Q  242 attaaatatttttaaaatcctcatattttatctatgctatcaaaattagt 291  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  43933757 attaaatgtttttaaaatcctcatattttatctctgttatcaaaattagt 43933708  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 13637531 - 13637587
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||||||||||||||| |||||||||||||  | |||||||||||||||    
T  13637531 atttcattaaatatttttaaaatcttcatattttatcttcgttatcaaaattagtct 13637587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 34743504 - 34743444
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgc 297  Q
    |||| ||||||| |||| |||||||||| ||||||| |||| |||||||||||||||||||    
T  34743504 atttcattaaatgttttaaaaatcctcacattttatatatgttatcaaaattagtctctgc 34743444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 43933496 - 43933551
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||||||||||||||||||| |||||||||  | ||||||||||||||    
T  43933496 atttcattaaatatttttaaaatcctcacattttatcttcgttatcaaaattagtc 43933551  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 44504148 - 44504203
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||||||||||||||||||| |||||||||  | ||||||||||||||    
T  44504148 atttcattaaatatttttaaaatcctcacattttatctccgttatcaaaattagtc 44504203  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 51471391 - 51471450
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||||||    
T  51471391 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctg 51471450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 22814352 - 22814413
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||| |||||    
T  22814352 atttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtccctgct 22814413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 50732281 - 50732342
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||||  |||||||||  | |||||||||||||| |||||    
T  50732281 atttcattaaatatttttaaaatcctcgcattttatctccgttatcaaaattagtccctgct 50732342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 50780574 - 50780513
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||||  |||||||||  | |||||||||||||| |||||    
T  50780574 atttcattaaatatttttaaaatcctcgcattttatctccgttatcaaaattagtccctgct 50780513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 13637814 - 13637759
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||||||||||||||||||| |||||||||  | |||||||| |||||    
T  13637814 atttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtc 13637759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 26741325 - 26741283
Alignment:
Q  250 tttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  26741325 tttttaaaatcctcacattttatctctgttatcaaaattagtc 26741283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 27013465 - 27013521
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||||||||||| ||||||||||||| | |||||||||  | ||||| |||||||||    
T  27013465 attttattaaatgtttttaaaatccttacattttatctccgttatcacaattagtct 27013521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 44504420 - 44504368
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaatta 289  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||    
T  44504420 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 44504368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 2606690 - 2606635
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| |||||||||| ||||||||||||||  ||||||||||||||||    
T  2606690 atttcattaaatgtttttaaaattctcatattttatctccgctatcaaaattagtc 2606635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 32114225 - 32114276
Alignment:
Q  241 tattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||| ||||||||||||||| ||||||||| || ||||||||||||||    
T  32114225 tattaaatgtttttaaaatcctcacattttatctctgatatcaaaattagtc 32114276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 10706685 - 10706624
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||||||||||||||||||| |||||||||  | |||||||| ||||| |||||    
T  10706685 atttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccctgct 10706624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 2517469 - 2517525
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||| ||||||||||||||| |||||||||  | |||||||||||||||    
T  2517469 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtct 2517525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 39729640 - 39729584
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtct 293  Q
    |||| ||||||||||||||||||||||| |||||||||  | |||| ||||||||||    
T  39729640 atttcattaaatatttttaaaatcctcacattttatctccgttatcgaaattagtct 39729584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 2191273 - 2191328
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||  | ||||||||||||||    
T  2191273 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 2191328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 21182363 - 21182422
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctg 296  Q
    |||| ||||||| ||||||||||  ||| ||||||||| || ||||||||||||||||||    
T  21182363 atttcattaaatgtttttaaaattttcacattttatctctgttatcaaaattagtctctg 21182422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 21216979 - 21217034
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||   |||||||||||||||    
T  21216979 atttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagtc 21217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 21265423 - 21265368
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| ||||||| ||||||||||||||| |||||||||   |||||||||||||||    
T  21265423 atttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagtc 21265368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 24093590 - 24093535
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||||||||||| ||||||||||||| | |||||||||  | ||||||||||||||    
T  24093590 attttattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtc 24093535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 32114505 - 32114450
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtc 292  Q
    |||| |||||||||||||||||| |||| | ||||||| || ||||||||||||||    
T  32114505 atttcattaaatatttttaaaattctcacactttatctctgttatcaaaattagtc 32114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 3691139 - 3691199
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgc 297  Q
    |||| ||||||| ||||||||||||||| ||||||||   | |||||||||||||| ||||    
T  3691139 atttcattaaatgtttttaaaatcctcacattttatcaccgttatcaaaattagtccctgc 3691199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 34848 - 34909
Alignment:
Q  237 attttattaaatatttttaaaatcctcatattttatctatgctatcaaaattagtctctgct 298  Q
    |||| ||||||| |||||||| | |||| |||||||||  | ||||||||||||||||||||    
T  34848 atttcattaaatgtttttaaagtactcacattttatctccgttatcaaaattagtctctgct 34909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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