View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_217 (Length: 301)
Name: NF8981_low_217
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_217 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 294
Target Start/End: Original strand, 7972840 - 7973102
Alignment:
| Q |
32 |
caaaaataattaatactatattttccttnnnnnnnngtaatataacaaaactaagctgtttctctttattttacagaatatttcatggtaagtgtaattt |
131 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7972840 |
caaaaaaaattaatactatattttcctttaaaaaaagtaatataacaaaactaatttgtttctctttattttacagaatatttaatggtaagtgtaatta |
7972939 |
T |
|
| Q |
132 |
gggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtgaaaagtagagtaccacc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
7972940 |
gggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccacc |
7973039 |
T |
|
| Q |
232 |
attttgcattccttccagaattacttgaaagttggtcttccttttgtttctccatctctgctt |
294 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |
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| T |
7973040 |
attttgcattccttccagaattacttggaagttgaacttccttttgtttctccatgtctgctt |
7973102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 96 - 288
Target Start/End: Complemental strand, 8041137 - 8040945
Alignment:
| Q |
96 |
tttattttacagaatatttcatggtaagtgtaatttgggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaa |
195 |
Q |
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||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8041137 |
tttattttagagaatatttcatggtgcgtgtaattagggtttgaaatataccatccaagagctgccatggaaaaggggagaccaagaacaccagctccaa |
8041038 |
T |
|
| Q |
196 |
ccatggcagtgacattgtgaaaagtagagtaccaccattttgcattccttccagaattacttgaaagttggtcttccttttgtttctccatct |
288 |
Q |
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| T |
8041037 |
ccatggcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttggaagttggtcttccttttgtttttccatct |
8040945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 8031769 - 8031614
Alignment:
| Q |
96 |
tttattttacagaatatttcatggtaagtgtaatttgggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaa |
195 |
Q |
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||||| ||| |||||| |||||| |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
8031769 |
tttatgttagagaatacttcatgacaagtgtaattagggtttgaaatataccatccaagatatgccatggaaaaggggagaccaagaacaccagctccaa |
8031670 |
T |
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| Q |
196 |
ccatggcagtgacattgtgaaaagtagagtaccaccattttgcattccttccagaa |
251 |
Q |
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|||| |||||||||||||| |||| ||| ||||||||||||||||||||| ||||| |
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| T |
8031669 |
ccattgcagtgacattgtggaaagaagaataccaccattttgcattcctttcagaa |
8031614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 7979989 - 7980098
Alignment:
| Q |
136 |
ttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtgaaaagtagagtaccaccattt |
235 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7979989 |
ttgaaatataccatccaagttgtgccatggcatgagggagaccaagaacaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattt |
7980088 |
T |
|
| Q |
236 |
tgcattcctt |
245 |
Q |
| |
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|||||||||| |
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| T |
7980089 |
tgcattcctt |
7980098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 96 - 287
Target Start/End: Original strand, 41382928 - 41383121
Alignment:
| Q |
96 |
tttattttacagaatattt--catggtaagtgtaatttgggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctcc |
193 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
41382928 |
tttattttagagaatatttttcatggtaagtgtaatttgggtttaaaatataccatccaagggctgccatggaaaaggggagaccaagaacaccagctcc |
41383027 |
T |
|
| Q |
194 |
aaccatggcagtgacattgtgaaaagtagagtaccaccattttgcattccttccagaattacttgaaagttggtcttccttttgtttctccatc |
287 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||| ||| || ||||||| ||||||| |||||| |
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| T |
41383028 |
aaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcggtcttcactttgtttttccatc |
41383121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 43851887 - 43851784
Alignment:
| Q |
142 |
tataccatccaagagctgccatggcaaaggggagac-caagaacaccagctccaaccatggcagtgacattgtgaaaagtagagtaccaccattttgcat |
240 |
Q |
| |
|
|||||||||||||| |||||||||| | || |||| ||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
43851887 |
tataccatccaagacttgccatggcagatggaagactcaaga-caccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcat |
43851789 |
T |
|
| Q |
241 |
tcctt |
245 |
Q |
| |
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||||| |
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| T |
43851788 |
tcctt |
43851784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 3898 - 4046
Alignment:
| Q |
96 |
tttattttacagaatatttcatggtaagtgtaatttgggtttgaaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaa |
195 |
Q |
| |
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||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |
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| T |
3898 |
tttattttagagactatttcatggtaagtgtaattagggtttgaa-tataccatccaagagctgccatggaataggggaggccaagaacaccagctccaa |
3996 |
T |
|
| Q |
196 |
ccatggcagtgacattgtgaaaagtagagtaccaccattttgcattcctt |
245 |
Q |
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|||| |||||||||||||| |||| ||| ||||||||||||||||||||| |
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| T |
3997 |
ccattgcagtgacattgtggaaagaagaataccaccattttgcattcctt |
4046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 14199113 - 14199215
Alignment:
| Q |
139 |
aaatataccatccaagagctgccatggcaaaggggagaccaagaacaccagctccaaccatggcagtgacattgtgaaaagtagagtaccaccattttgc |
238 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||| |||||||| || | ||| |||||||||||||| |
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|
| T |
14199113 |
aaatataccatccaagttgagccatggcataagggagactaagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttgc |
14199212 |
T |
|
| Q |
239 |
att |
241 |
Q |
| |
|
||| |
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|
| T |
14199213 |
att |
14199215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 34408966 - 34408914
Alignment:
| Q |
192 |
ccaaccatggcagtgacattgtgaaaagtagagtaccaccattttgcattcct |
244 |
Q |
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||||||||||| |||| ||||||||||| ||||||||||||||| || ||||| |
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| T |
34408966 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcct |
34408914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 361787 - 361842
Alignment:
| Q |
183 |
acaccagctccaaccatggcagtgacattgtgaaaagtagagtaccaccattttgc |
238 |
Q |
| |
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|||||||| |||||||| ||||| ||||| |||||||| || |||||||||||||| |
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| T |
361787 |
acaccagcaccaaccatagcagtcacattatgaaaagttgaataccaccattttgc |
361842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 42986774 - 42986823
Alignment:
| Q |
177 |
ccaagaacaccagctccaaccatggcagtgacattgtgaaaagtagagta |
226 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||| | |||||| |
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|
| T |
42986774 |
ccaagaactgcagctccaaccatggcagtgacattatgaaacgcagagta |
42986823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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