View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_low_218 (Length: 297)
Name: NF8981_low_218
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_low_218 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 42060760 - 42060490
Alignment:
| Q |
20 |
acaaggtccaaaagtaaaataggaatnnnnnnntaagaagaccaaataaagtaataaacaatctaatgagaagctcgtgaagttaaatcccatgttattt |
119 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060760 |
acaaggtccaaaagtaaaataggaataaaaaaataagaagaccaaataaagtaataaacaatctaatgagaagctcgtgaagttaaatcccatgttattt |
42060661 |
T |
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| Q |
120 |
aattgctaacaacgttattctttctttgaaatccagtaattagcctaagataatgacgtacgtatttatcttagctggtttaaga---tagaactaatag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42060660 |
aattgctaacaacgttattctttctttgaaatccagtaattagcctaagataatgacgtacgtatttatcttagctggtttaagatagtagaactaatag |
42060561 |
T |
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| Q |
217 |
agtatcctttattgcttcattgaaaaagtcaaatttaatctatgctctctgggttgcttaaaacaccaaac |
287 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060560 |
agtatcctttattgcttcattggaaaagtcaaatttaatctatgctctctgggttgcttaaaacaccaaac |
42060490 |
T |
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